Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FAM172BP-201ENST00000487497 1089 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 UBE2Q2P9-201ENST00000490086 202 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 COX6CP8-201ENST00000522620 226 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 CR383656.7-201ENST00000548164 174 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC087465.1-201ENST00000560574 245 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 FAM60BP-201ENST00000578364 658 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 VN1R82P-201ENST00000601481 356 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC234772.3-201ENST00000602277 528 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 DUXAP11-201ENST00000603858 526 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL031176.1-201ENST00000604554 466 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC012468.1-201ENST00000604888 430 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL592221.1-201ENST00000605266 382 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL390240.1-201ENST00000612950 384 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL445264.1-201ENST00000621719 171 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AP002782.1-201ENST00000623107 614 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC018692.3-201ENST00000623929 123 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.77□□□□□ -1.97
SKA3Q8IX90 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SKA3Q8IX90 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC116096.1-201ENST00000566804 2314 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SKA3Q8IX90 MAPK10-266ENST00000641066 6555 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SKA3Q8IX90 DDX43P2-201ENST00000604753 1354 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC002546.1-201ENST00000588041 2504 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
SKA3Q8IX90 OR5H2-201ENST00000355273 945 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 Y_RNA.234-201ENST00000364409 97 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 RNU6-157P-201ENST00000383957 107 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC109780.2-201ENST00000413467 845 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 HIGD1AP15-201ENST00000416198 280 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 RPL22P18-201ENST00000417197 377 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SKA3Q8IX90 SSXP9-201ENST00000417503 292 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC104332.2-201ENST00000429959 156 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 ZYG11AP1-201ENST00000430329 837 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 MTND1P32-201ENST00000433043 938 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC108734.1-201ENST00000439549 399 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 EEF1E1P1-201ENST00000446998 430 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 RSL24D1P3-201ENST00000449255 495 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 RPL23AP31-201ENST00000456160 467 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 BX510359.1-201ENST00000456973 237 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 RN7SL863P-201ENST00000462370 296 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 RPL31P50-201ENST00000471002 296 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AHI1-208ENST00000488690 712 ntTSL 5 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC034244.1-201ENST00000507687 207 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 RNU1-61P-201ENST00000516107 151 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 RNU5A-4P-201ENST00000516588 111 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC105185.1-201ENST00000518705 535 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC023050.2-201ENST00000544968 387 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC090615.1-201ENST00000577519 154 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 BNIP3P33-201ENST00000598912 569 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 PRELID3BP8-201ENST00000604148 295 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AL133507.1-201ENST00000605269 557 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 TUSC7.1-201ENST00000610969 165 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC107871.2-201ENST00000612894 502 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AL357080.1-201ENST00000617394 239 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC138932.5-201ENST00000617759 563 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC095031.1-201ENST00000623685 672 ntBASIC2.76□□□□□ -1.97
SKA3Q8IX90 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.76□□□□□ -1.97
SKA3Q8IX90 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
SKA3Q8IX90 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
SKA3Q8IX90 SNORA46-201ENST00000384762 135 ntBASIC2.75□□□□□ -1.97
SKA3Q8IX90 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC2.75□□□□□ -1.97
SKA3Q8IX90 YPEL5P1-201ENST00000419731 367 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms