Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC034105.3-201ENST00000565294 442 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC067852.3-201ENST00000589177 561 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 DPPA3P3-201ENST00000603842 430 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AL049634.3-201ENST00000604968 457 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC023043.4-201ENST00000612081 449 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC025034.2-201ENST00000623264 286 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 PABPC1P6-201ENST00000445594 1829 ntBASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC3.76□□□□□ -1.81
CCDC28AQ8IWP9 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 MAPK10-373ENST00000641983 6772 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC011493.1-201ENST00000596753 1632 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 Y_RNA.381-201ENST00000365666 102 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 DEFB109C-201ENST00000382575 264 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 DEFB109B-201ENST00000382656 264 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 SNORA24.1-201ENST00000384401 135 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-328P-201ENST00000390887 106 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AL133270.1-201ENST00000402635 279 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 RN7SKP285-201ENST00000410137 318 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-387P-201ENST00000411331 105 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC114491.1-201ENST00000416095 246 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 NDUFB4P7-201ENST00000423198 363 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC108075.1-201ENST00000424692 529 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 MTND1P2-201ENST00000430604 821 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 MRPS33P2-201ENST00000507850 322 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC106872.4-201ENST00000510050 523 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC108078.2-201ENST00000510750 236 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 SNORA31.3-201ENST00000516029 96 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 IGKV2-23-201ENST00000518729 323 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 OR5AL2P-201ENST00000532185 920 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC007225.2-201ENST00000562529 256 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC068135.2-201ENST00000569293 1028 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC012146.2-201ENST00000576545 416 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC024619.4-201ENST00000580924 316 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC174048.1-201ENST00000603389 144 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC106900.2-201ENST00000604994 317 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC007619.2-201ENST00000605743 379 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC133644.2-201ENST00000608142 540 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC103710.3-201ENST00000608157 948 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 AC244205.2-202ENST00000635781 342 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 U6.114-201ENST00000636407 96 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 RAD17P1-201ENST00000418130 2042 ntBASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC28AQ8IWP9 NCAPGP1-201ENST00000505112 1814 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 SNORA17.1-201ENST00000362945 126 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 RNA5SP428-201ENST00000365129 132 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 RNA5SP151-201ENST00000365632 117 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 SNORA70.10-201ENST00000384515 134 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-817P-201ENST00000391083 104 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 AL591416.1-201ENST00000404015 867 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 ARL4AP5-201ENST00000404372 599 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 HSPE1P26-201ENST00000405341 275 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 RNU2-37P-201ENST00000410695 177 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 RPL23AP25-201ENST00000430973 463 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 HMGB1P27-201ENST00000431429 603 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 HMGB1P12-201ENST00000438594 598 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 SEPT14P3-201ENST00000439401 183 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 RBMX2P4-201ENST00000441256 376 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 AL732372.2-207ENST00000445840 183 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 SEPT14P2-201ENST00000453405 183 ntBASIC3.74□□□□□ -1.81
CCDC28AQ8IWP9 RN7SL585P-201ENST00000470538 280 ntBASIC3.74□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 126.6 ms