Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TRMT112P2-201ENST00000512910 132 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AC126177.3-201ENST00000551839 688 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AC027104.1-201ENST00000563702 681 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AC103810.1-201ENST00000579873 453 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AC002984.1-201ENST00000591692 448 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AL049779.4-201ENST00000604500 156 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AP001350.1-201ENST00000601906 1524 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 MTND5P3-201ENST00000438536 1800 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AL049737.1-201ENST00000413920 1403 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 USP9YP27-201ENST00000418455 438 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 MTCYBP24-201ENST00000420387 1106 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 HMGB1P12-201ENST00000438594 598 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 RPL23AP7-203ENST00000449021 469 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AL513343.1-201ENST00000451818 792 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AL035407.2-201ENST00000454090 378 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AC022616.2-201ENST00000523185 300 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AP001542.2-201ENST00000593141 364 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 U6.48-201ENST00000618523 106 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AL391597.1-201ENST00000618707 694 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 AL353748.2-201ENST00000622148 471 ntBASIC2.37□□□□□ -2.03
CCDC88AQ3V6T2 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AL139276.1-201ENST00000311910 1001 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 RNU6-661P-201ENST00000362409 107 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 RNA5SP138-201ENST00000365098 114 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 MTND2P16-201ENST00000419987 799 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 SDR42E1P3-201ENST00000438345 502 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 RNU7-95P-201ENST00000459222 64 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 RNU6-56P-201ENST00000516986 93 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 MIR4255-201ENST00000579351 72 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AC019159.1-201ENST00000605094 187 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AL110115.1-201ENST00000614396 364 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 AC084768.2-201ENST00000622736 221 ntBASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC88AQ3V6T2 RNU6-98P-201ENST00000384173 107 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 SNORA51.11-201ENST00000384442 131 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 RNA5SP338-201ENST00000410495 85 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 RPL21P32-201ENST00000419877 477 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AL591719.1-201ENST00000444669 744 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 RPL23AP20-201ENST00000447965 421 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC023424.2-201ENST00000493479 777 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC025459.1-201ENST00000504072 156 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 SNORA31.11-201ENST00000516528 139 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC073387.2-201ENST00000604797 784 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC006023.2-201ENST00000609916 167 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC107905.1-201ENST00000616204 426 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 Y_RNA.191-201ENST00000363972 113 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 RNU6-629P-201ENST00000384061 103 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 RNU6-185P-201ENST00000384421 107 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 MTCO3P4-201ENST00000419236 787 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AL121578.1-201ENST00000428051 892 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC245517.4-201ENST00000448601 281 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 RNU6-717P-201ENST00000459076 104 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 snoU13.7-201ENST00000459220 104 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 RPL21P104-201ENST00000464143 478 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 HMGN1P28-201ENST00000521340 364 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC109635.4-202ENST00000531666 412 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AP005136.1-201ENST00000579765 429 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC009220.3-201ENST00000604318 586 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 AC090617.7-201ENST00000623952 126 ntBASIC2.35□□□□□ -2.03
CCDC88AQ3V6T2 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 MIRLET7G-201ENST00000362280 84 ntBASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 HMGB1P10-201ENST00000395823 563 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms