Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC004696.1-201ENST00000614345 607 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC073968.1-201ENST00000618594 637 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
COL4A4P53420 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
COL4A4P53420 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A4P53420 SNORA51.4-201ENST00000364993 124 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.76□□□□□ -1.97
COL4A4P53420 RNU6-1215P-201ENST00000384441 102 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 MIR7-2-201ENST00000384970 110 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC2.76□□□□□ -1.97
COL4A4P53420 VN1R42P-201ENST00000424651 344 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.76□□□□□ -1.97
COL4A4P53420 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC2.76□□□□□ -1.97
COL4A4P53420 FABP5P3-201ENST00000437960 408 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC2.76□□□□□ -1.97
COL4A4P53420 MTATP6P23-201ENST00000440153 476 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 FAM103A2P-201ENST00000444122 354 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AL929288.2-201ENST00000446368 407 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A4P53420 AC002553.2-201ENST00000453217 340 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC2.76□□□□□ -1.97
COL4A4P53420 HMGB1P25-201ENST00000468402 607 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 RPL23AP44-201ENST00000482216 473 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC092185.1-201ENST00000491371 97 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC090543.1-201ENST00000492168 485 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.76□□□□□ -1.97
COL4A4P53420 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL4A4P53420 RNU6-1028P-201ENST00000517164 93 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 MTND4LP26-201ENST00000518144 282 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 PTK2-220ENST00000520151 573 ntTSL 4 BASIC2.76□□□□□ -1.97
COL4A4P53420 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC006518.2-201ENST00000542513 940 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.76□□□□□ -1.97
COL4A4P53420 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC090695.1-201ENST00000561269 1222 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AADACP1-206ENST00000561502 1193 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 MTND3P19-201ENST00000603825 345 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC007938.3-201ENST00000604965 623 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC010738.1-201ENST00000604970 987 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC016877.3-201ENST00000606778 504 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC109347.2-201ENST00000610220 349 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 VN1R74P-201ENST00000613259 503 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC022079.2-201ENST00000619739 566 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AL356266.1-201ENST00000623311 483 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC092656.1-203ENST00000624134 423 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 AC091965.5-201ENST00000624785 342 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.76□□□□□ -1.97
COL4A4P53420 AC132825.8-201ENST00000640783 297 ntBASIC2.76□□□□□ -1.97
COL4A4P53420 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC2.75□□□□□ -1.97
COL4A4P53420 AC073544.1-201ENST00000600110 1595 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 ZNF876P-202ENST00000398732 1485 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
COL4A4P53420 Y_RNA.88-201ENST00000363029 99 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 OR5H15-201ENST00000383696 930 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 RNU6-83P-201ENST00000384568 112 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 MIR489-201ENST00000384923 84 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 RNU4-53P-201ENST00000410828 140 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A4P53420 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A4P53420 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
COL4A4P53420 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A4P53420 SRRM1P2-201ENST00000464531 1192 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AC091544.1-201ENST00000484702 348 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 FABP5P6-201ENST00000510588 409 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A4P53420 RNU6-720P-201ENST00000516363 108 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A4P53420 AC021733.2-201ENST00000518830 497 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A4P53420 ELOCP32-201ENST00000548625 324 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AC025260.1-201ENST00000548858 430 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A4P53420 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.75□□□□□ -1.97
COL4A4P53420 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC2.75□□□□□ -1.97
COL4A4P53420 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A4P53420 MTND4LP24-201ENST00000572277 291 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 MTCO3P24-201ENST00000572729 782 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.75□□□□□ -1.97
COL4A4P53420 AP001981.2-201ENST00000603241 418 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AP000811.1-201ENST00000603803 651 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AC080013.4-201ENST00000607624 649 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 RNU6-84P-201ENST00000607737 102 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 AF250324.2-201ENST00000608299 610 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC2.75□□□□□ -1.97
COL4A4P53420 AC079248.2-201ENST00000623779 326 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.75□□□□□ -1.97
COL4A4P53420 AC027514.1-201ENST00000588561 1603 ntBASIC2.75□□□□□ -1.97
COL4A4P53420 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC2.75□□□□□ -1.97
COL4A4P53420 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
COL4A4P53420 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL4A4P53420 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
COL4A4P53420 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
COL4A4P53420 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL4A4P53420 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
COL4A4P53420 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
COL4A4P53420 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms