Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD3P31249 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.42□□□□□ -1.86
HOXD3P31249 RPS15AP36-201ENST00000492022 382 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AC139783.2-201ENST00000504847 1145 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD3P31249 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXD3P31249 FAM60DP-201ENST00000524174 632 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 PSMA2P1-201ENST00000526365 646 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 PHBP17-201ENST00000528576 541 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 AC126177.3-201ENST00000551839 688 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 FGF7P1-201ENST00000582820 288 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 MIR4293-201ENST00000584305 78 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 C8orf59P2-201ENST00000603441 271 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 RNF138P2-201ENST00000603490 592 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 BNIP3P10-201ENST00000605360 577 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD3P31249 AC233309.1-201ENST00000619522 751 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AC010338.1-201ENST00000621823 717 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AC093648.1-201ENST00000623546 606 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD3P31249 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD3P31249 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD3P31249 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD3P31249 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 DLD-204ENST00000437604 1859 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD3P31249 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD3P31249 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD3P31249 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXD3P31249 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD3P31249 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXD3P31249 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD3P31249 RNU6-188P-201ENST00000364207 107 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 Y_RNA.279-201ENST00000364763 95 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD3P31249 RNU6-432P-201ENST00000384196 109 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 RNU6-606P-201ENST00000384721 111 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 MIR135A2-201ENST00000384854 100 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 MIR558-201ENST00000384920 94 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 MIR134-201ENST00000385258 73 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AL354719.1-201ENST00000406535 843 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AC114491.1-201ENST00000416095 246 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 SNRPEP10-201ENST00000420249 274 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 RPL23AP38-201ENST00000423801 469 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AC073587.1-201ENST00000447093 876 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXD3P31249 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD3P31249 MTND1P9-201ENST00000453775 944 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD3P31249 AMD1P1-201ENST00000457220 922 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 RN7SL98P-201ENST00000462271 300 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AP000852.1-201ENST00000472460 573 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD3P31249 AC091167.1-201ENST00000492017 396 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AC108022.1-201ENST00000493466 478 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD3P31249 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD3P31249 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD3P31249 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD3P31249 LRRC34P2-201ENST00000514850 553 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD3P31249 OR4R3P-201ENST00000525084 838 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 OR5B10P-201ENST00000532869 642 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD3P31249 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD3P31249 AC123904.3-201ENST00000547218 814 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXD3P31249 RPL21P12-201ENST00000559810 515 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AC055876.1-202ENST00000567053 138 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD3P31249 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXD3P31249 AC010525.2-201ENST00000590920 195 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AL117336.2-201ENST00000602435 335 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 HMGN2P28-201ENST00000606102 262 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AL158196.1-201ENST00000616786 434 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 AC006504.8-201ENST00000621046 635 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD3P31249 AC138649.5-201ENST00000637456 137 ntBASIC3.41□□□□□ -1.86
HOXD3P31249 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD3P31249 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.41□□□□□ -1.86
HOXD3P31249 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.41□□□□□ -1.86
HOXD3P31249 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXD3P31249 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXD3P31249 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD3P31249 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXD3P31249 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXD3P31249 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.4□□□□□ -1.86
HOXD3P31249 MTCO1P9-201ENST00000505577 1534 ntBASIC3.4□□□□□ -1.86
HOXD3P31249 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXD3P31249 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC3.4□□□□□ -1.86
HOXD3P31249 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXD3P31249 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.4□□□□□ -1.86
HOXD3P31249 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.4□□□□□ -1.86
HOXD3P31249 OR5P1P-201ENST00000299512 925 ntBASIC3.4□□□□□ -1.87
HOXD3P31249 NACAP2-201ENST00000318548 624 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms