Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC009965.2-201ENST00000425328 970 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 MTND4LP7-201ENST00000431728 294 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 MTND2P3-201ENST00000452458 470 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 TPRKBP1-201ENST00000456243 481 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.25□□□□□ -2.05
COL5A3P25940 AC067904.2-201ENST00000517322 1283 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AC104986.1-201ENST00000517978 436 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 SNRPGP1-201ENST00000553864 222 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.25□□□□□ -2.05
COL5A3P25940 AL731537.2-201ENST00000561565 951 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
COL5A3P25940 HMGN2P28-201ENST00000606102 262 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AC092954.1-201ENST00000609121 445 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 VN1R74P-201ENST00000613259 503 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AC003001.2-201ENST00000616294 831 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 LINC00216-201ENST00000623548 1126 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.25□□□□□ -2.05
COL5A3P25940 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
COL5A3P25940 RNA5SP189-201ENST00000364920 115 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 AP000275.1-201ENST00000411943 390 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 RPL26P37-201ENST00000411983 438 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 RPL7P46-201ENST00000425129 740 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.24□□□□□ -2.05
COL5A3P25940 AL627224.1-201ENST00000448334 444 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.24□□□□□ -2.05
COL5A3P25940 AC010627.1-201ENST00000503819 1294 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 AC021146.7-201ENST00000509604 775 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.24□□□□□ -2.05
COL5A3P25940 OR4V1P-201ENST00000525394 1140 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 MIR548Y-201ENST00000582739 110 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 AC020895.1-201ENST00000595362 272 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 RPL23AP78-201ENST00000599928 470 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 AL360085.1-201ENST00000604713 532 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 AC024560.3-201ENST00000608482 349 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 AC034102.8-201ENST00000615146 484 ntBASIC2.24□□□□□ -2.05
COL5A3P25940 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.24□□□□□ -2.05
COL5A3P25940 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.24□□□□□ -2.05
COL5A3P25940 DCAF13P1-201ENST00000495256 1330 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
COL5A3P25940 MIRLET7G-201ENST00000362280 84 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 RNU6-582P-201ENST00000362989 107 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.23□□□□□ -2.05
COL5A3P25940 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
COL5A3P25940 AL590084.1-201ENST00000407885 387 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC2.23□□□□□ -2.05
COL5A3P25940 FAM204CP-201ENST00000424489 642 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 AC005517.2-201ENST00000424673 553 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 HMGN2P20-201ENST00000437531 273 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 ARL5AP3-201ENST00000439327 386 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 AL021397.1-201ENST00000451806 248 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 AL513343.1-201ENST00000451818 792 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
COL5A3P25940 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC2.23□□□□□ -2.05
COL5A3P25940 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.23□□□□□ -2.05
COL5A3P25940 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC2.23□□□□□ -2.05
COL5A3P25940 MTCO2P22-201ENST00000603246 681 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.23□□□□□ -2.05
COL5A3P25940 AC010872.1-201ENST00000624225 675 ntBASIC2.23□□□□□ -2.05
COL5A3P25940 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
COL5A3P25940 MIR7-1-201ENST00000384871 110 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC2.22□□□□□ -2.05
COL5A3P25940 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.22□□□□□ -2.05
COL5A3P25940 AL353898.1-201ENST00000444055 238 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 BX322784.1-201ENST00000455793 1077 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 MTCO1P42-201ENST00000457379 726 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.22□□□□□ -2.05
COL5A3P25940 OR52A4P-202ENST00000481634 799 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.22□□□□□ -2.05
COL5A3P25940 RNA5SP490-201ENST00000517141 136 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 PTP4A1P6-201ENST00000531034 478 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 ARL2BPP2-201ENST00000550907 489 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AL163153.1-201ENST00000554223 283 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC2.22□□□□□ -2.05
COL5A3P25940 AC010546.1-201ENST00000569391 485 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AC073111.2-201ENST00000605657 1075 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL5A3P25940 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.22□□□□□ -2.05
COL5A3P25940 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
COL5A3P25940 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL5A3P25940 RNU4-31P-201ENST00000384211 141 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 MTCO1P43-201ENST00000431831 488 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 HMGB1P12-201ENST00000438594 598 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AC104308.1-201ENST00000454621 333 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AC010683.1-201ENST00000473673 378 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC2.22□□□□□ -2.05
COL5A3P25940 AC090453.1-201ENST00000495560 436 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.22□□□□□ -2.05
COL5A3P25940 AC098799.2-201ENST00000509466 868 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC2.22□□□□□ -2.05
COL5A3P25940 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC2.22□□□□□ -2.05
COL5A3P25940 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.22□□□□□ -2.05
COL5A3P25940 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.22□□□□□ -2.05
COL5A3P25940 AC090897.3-201ENST00000636973 1157 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 AL163152.1-201ENST00000642001 374 ntBASIC2.22□□□□□ -2.05
COL5A3P25940 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL5A3P25940 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
COL5A3P25940 RNU6-666P-201ENST00000363499 107 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 MIR421-201ENST00000365696 85 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 RPL19P1-201ENST00000411635 428 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms