Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC5.76□□□□□ -1.49
RFX1P22670 BX842559.1-201ENST00000419615 532 ntBASIC5.76□□□□□ -1.49
RFX1P22670 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.76□□□□□ -1.49
RFX1P22670 RPL7P37-201ENST00000425095 738 ntBASIC5.76□□□□□ -1.49
RFX1P22670 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.76□□□□□ -1.49
RFX1P22670 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.76□□□□□ -1.49
RFX1P22670 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.76□□□□□ -1.49
RFX1P22670 H2AFZP5-201ENST00000446960 382 ntBASIC5.76□□□□□ -1.49
RFX1P22670 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.76□□□□□ -1.49
RFX1P22670 HSPE1P6-201ENST00000479457 291 ntBASIC5.76□□□□□ -1.49
RFX1P22670 AC012158.1-204ENST00000483430 465 ntBASIC5.76□□□□□ -1.49
RFX1P22670 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC5.76□□□□□ -1.49
RFX1P22670 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RFX1P22670 AL671862.1-201ENST00000515851 349 ntBASIC5.76□□□□□ -1.49
RFX1P22670 RNU4ATAC7P-201ENST00000516280 125 ntBASIC5.76□□□□□ -1.49
RFX1P22670 RNU6-1137P-201ENST00000517073 99 ntBASIC5.76□□□□□ -1.49
RFX1P22670 AC027369.5-201ENST00000533838 755 ntBASIC5.76□□□□□ -1.49
RFX1P22670 AL355836.1-201ENST00000555951 870 ntBASIC5.76□□□□□ -1.49
RFX1P22670 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC5.76□□□□□ -1.49
RFX1P22670 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.76□□□□□ -1.49
RFX1P22670 MIR4660-201ENST00000583549 74 ntBASIC5.76□□□□□ -1.49
RFX1P22670 AC012119.1-201ENST00000603184 222 ntBASIC5.76□□□□□ -1.49
RFX1P22670 Z98200.1-201ENST00000607298 470 ntBASIC5.76□□□□□ -1.49
RFX1P22670 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.76□□□□□ -1.49
RFX1P22670 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.76□□□□□ -1.49
RFX1P22670 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
RFX1P22670 EFTUD1P2-201ENST00000514817 1603 ntBASIC5.76□□□□□ -1.49
RFX1P22670 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.76□□□□□ -1.49
RFX1P22670 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
RFX1P22670 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
RFX1P22670 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
RFX1P22670 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.76□□□□□ -1.49
RFX1P22670 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
RFX1P22670 AL049641.1-201ENST00000441055 1948 ntBASIC5.76□□□□□ -1.49
RFX1P22670 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
RFX1P22670 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RFX1P22670 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
RFX1P22670 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
RFX1P22670 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
RFX1P22670 AC114947.2-201ENST00000565748 2125 ntBASIC5.75□□□□□ -1.49
RFX1P22670 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
RFX1P22670 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.75□□□□□ -1.49
RFX1P22670 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.75□□□□□ -1.49
RFX1P22670 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RFX1P22670 RNU6-1115P-201ENST00000362490 106 ntBASIC5.75□□□□□ -1.49
RFX1P22670 Y_RNA.148-201ENST00000363557 117 ntBASIC5.75□□□□□ -1.49
RFX1P22670 SNORA75B-201ENST00000384053 137 ntBASIC5.75□□□□□ -1.49
RFX1P22670 Y_RNA.534-201ENST00000384599 112 ntBASIC5.75□□□□□ -1.49
RFX1P22670 RPS4XP7-201ENST00000406274 780 ntBASIC5.75□□□□□ -1.49
RFX1P22670 AL513331.1-201ENST00000411908 397 ntBASIC5.75□□□□□ -1.49
RFX1P22670 COX5BP7-201ENST00000414780 274 ntBASIC5.75□□□□□ -1.49
RFX1P22670 RPS12P23-201ENST00000419579 400 ntBASIC5.75□□□□□ -1.49
RFX1P22670 AC018865.2-201ENST00000423631 129 ntBASIC5.75□□□□□ -1.49
RFX1P22670 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.75□□□□□ -1.49
RFX1P22670 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.75□□□□□ -1.49
RFX1P22670 TAF8-207ENST00000482432 556 ntTSL 2 BASIC5.75□□□□□ -1.49
RFX1P22670 AC058823.1-201ENST00000485315 474 ntBASIC5.75□□□□□ -1.49
RFX1P22670 RN7SL814P-201ENST00000487715 300 ntBASIC5.75□□□□□ -1.49
RFX1P22670 AC021146.3-201ENST00000511911 260 ntBASIC5.75□□□□□ -1.49
RFX1P22670 RNU6-914P-201ENST00000516749 109 ntBASIC5.75□□□□□ -1.49
RFX1P22670 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC5.75□□□□□ -1.49
RFX1P22670 AP004607.2-201ENST00000533949 322 ntBASIC5.75□□□□□ -1.49
RFX1P22670 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.75□□□□□ -1.49
RFX1P22670 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.75□□□□□ -1.49
RFX1P22670 AL352979.3-201ENST00000553515 247 ntBASIC5.75□□□□□ -1.49
RFX1P22670 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC5.75□□□□□ -1.49
RFX1P22670 AC005951.2-201ENST00000576282 495 ntBASIC5.75□□□□□ -1.49
RFX1P22670 MIR3934-201ENST00000579806 107 ntBASIC5.75□□□□□ -1.49
RFX1P22670 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.75□□□□□ -1.49
RFX1P22670 AC000068.2-201ENST00000608816 460 ntBASIC5.75□□□□□ -1.49
RFX1P22670 AL158196.1-201ENST00000616786 434 ntBASIC5.75□□□□□ -1.49
RFX1P22670 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC5.75□□□□□ -1.49
RFX1P22670 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.75□□□□□ -1.49
RFX1P22670 MTND4P1-201ENST00000457501 1466 ntBASIC5.75□□□□□ -1.49
RFX1P22670 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RFX1P22670 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.75□□□□□ -1.49
RFX1P22670 AL359922.3-201ENST00000624779 1670 ntBASIC5.75□□□□□ -1.49
RFX1P22670 LINC01109-201ENST00000603837 3081 ntBASIC5.75□□□□□ -1.49
RFX1P22670 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
RFX1P22670 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.74□□□□□ -1.49
RFX1P22670 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RFX1P22670 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.74□□□□□ -1.49
RFX1P22670 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
RFX1P22670 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.74□□□□□ -1.49
RFX1P22670 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
RFX1P22670 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RFX1P22670 AL022311.1-201ENST00000623726 19416 ntBASIC5.74□□□□□ -1.49
RFX1P22670 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5.74□□□□□ -1.49
RFX1P22670 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RFX1P22670 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
RFX1P22670 AC008079.2-201ENST00000623543 20396 ntBASIC5.74□□□□□ -1.49
RFX1P22670 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RFX1P22670 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
RFX1P22670 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.74□□□□□ -1.49
RFX1P22670 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
RFX1P22670 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RFX1P22670 MIR133B-201ENST00000362210 119 ntBASIC5.74□□□□□ -1.49
RFX1P22670 RNA5SP183-201ENST00000362452 119 ntBASIC5.74□□□□□ -1.49
RFX1P22670 RNU1-43P-201ENST00000365052 165 ntBASIC5.74□□□□□ -1.49
RFX1P22670 RNU6-214P-201ENST00000384130 107 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms