Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MTCO2P12-201ENST00000427426 682 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AC016691.1-201ENST00000441321 413 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 HSPE1P28-201ENST00000443139 211 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.84□□□□□ -1.63
COL6A1P12109 AL121877.1-201ENST00000453704 622 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.84□□□□□ -1.63
COL6A1P12109 RPS4XP18-201ENST00000495480 763 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 NIPA2P2-201ENST00000496376 1083 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 TMEM248P1-201ENST00000510579 951 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.84□□□□□ -1.63
COL6A1P12109 SNORD60.2-201ENST00000516883 86 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.84□□□□□ -1.63
COL6A1P12109 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC4.84□□□□□ -1.63
COL6A1P12109 HSPE1P5-201ENST00000561489 272 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC4.84□□□□□ -1.63
COL6A1P12109 HMGB1P6-201ENST00000569046 646 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 RN7SL435P-201ENST00000584418 282 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.84□□□□□ -1.63
COL6A1P12109 AC012468.1-201ENST00000604888 430 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 HMGN2P28-201ENST00000606102 262 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 SNORA51-201ENST00000606420 132 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AC091953.5-201ENST00000622919 233 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AL445363.3-201ENST00000623080 671 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 MIR1302-1-201ENST00000637932 143 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A1P12109 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A1P12109 AL672167.1-204ENST00000641875 3017 ntBASIC4.84□□□□□ -1.63
COL6A1P12109 AC105074.1-201ENST00000623380 3095 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
COL6A1P12109 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A1P12109 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A1P12109 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
COL6A1P12109 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.83□□□□□ -1.64
COL6A1P12109 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A1P12109 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A1P12109 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A1P12109 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.83□□□□□ -1.64
COL6A1P12109 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.83□□□□□ -1.64
COL6A1P12109 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A1P12109 RNA5SP119-201ENST00000362715 117 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 RNU6-108P-201ENST00000365558 107 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 RNU6-837P-201ENST00000391056 108 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 AC068050.1-201ENST00000394891 380 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 ARF4P3-201ENST00000397387 509 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 RNU6-1068P-201ENST00000410958 103 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 AC078974.1-201ENST00000411597 223 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.83□□□□□ -1.64
COL6A1P12109 GPR143P-201ENST00000434155 205 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.83□□□□□ -1.64
COL6A1P12109 TRBV26-201ENST00000456572 344 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.83□□□□□ -1.64
COL6A1P12109 AL592156.1-201ENST00000508758 304 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 RNA5SP401-201ENST00000515920 127 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 RNA5SP519-201ENST00000516480 119 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 AP003072.2-201ENST00000527756 676 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 CYCSP28-201ENST00000534284 321 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 AL355375.2-201ENST00000574825 175 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A1P12109 AL353997.4-201ENST00000586196 166 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.83□□□□□ -1.64
COL6A1P12109 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A1P12109 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.83□□□□□ -1.64
COL6A1P12109 RMST_7.1-201ENST00000621935 268 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A1P12109 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A1P12109 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A1P12109 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A1P12109 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL6A1P12109 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.83□□□□□ -1.64
COL6A1P12109 AC000374.1-201ENST00000434698 1745 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 AC092447.10-201ENST00000620607 1652 ntBASIC4.83□□□□□ -1.64
COL6A1P12109 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.83□□□□□ -1.64
COL6A1P12109 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A1P12109 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A1P12109 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A1P12109 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.82□□□□□ -1.64
COL6A1P12109 NACAP2-201ENST00000318548 624 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 RNA5SP502-201ENST00000362694 119 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 Y_RNA.58-201ENST00000362807 102 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 Y_RNA.154-201ENST00000363624 102 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 RNA5SP189-201ENST00000364920 115 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 SNORA73.2-201ENST00000364946 201 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 RNY3P1-201ENST00000365085 102 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 RNY3-201ENST00000365484 102 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 Y_RNA.490-201ENST00000384413 102 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 RNU6-1158P-201ENST00000391167 107 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 AC097374.1-203ENST00000400783 485 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 RN7SKP140-201ENST00000411196 284 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.82□□□□□ -1.64
COL6A1P12109 EI24P1-201ENST00000416584 867 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 AC108032.1-201ENST00000416706 207 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 RPL21P112-201ENST00000434403 463 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 KCTD9P3-201ENST00000434597 1169 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.82□□□□□ -1.64
COL6A1P12109 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.82□□□□□ -1.64
COL6A1P12109 NIPA2P5-201ENST00000452282 464 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 snoU13.24-201ENST00000458998 104 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 RNA5SP103-201ENST00000459503 118 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 MTCO2P29-201ENST00000465212 189 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 AC022795.1-201ENST00000473808 480 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms