Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXC11O43248 RPS15AP36-201ENST00000492022 382 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC11O43248 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXC11O43248 AC004069.2-201ENST00000505438 1114 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC109464.2-201ENST00000510242 943 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 SNORA70.16-201ENST00000516390 95 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 SNORA31.22-201ENST00000517204 135 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 FAM60DP-201ENST00000524174 632 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXC11O43248 RPL23AP84-201ENST00000571193 464 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXC11O43248 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXC11O43248 U73023.1-201ENST00000603134 700 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AL137849.1-201ENST00000604767 169 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC121334.2-201ENST00000605387 271 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 OR2AS2P-201ENST00000606902 342 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC103710.1-201ENST00000610003 901 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC073114.1-201ENST00000612027 490 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC11O43248 TUG1_2.1-201ENST00000614234 87 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC008121.2-201ENST00000614647 523 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 PLCE1P1-201ENST00000622094 305 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC025048.6-202ENST00000627667 438 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXC11O43248 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC11O43248 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC11O43248 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC11O43248 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
HOXC11O43248 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC11O43248 SDAD1P2-201ENST00000441308 2028 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.85□□□□□ -1.79
HOXC11O43248 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
HOXC11O43248 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXC11O43248 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXC11O43248 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXC11O43248 IPO8P1-201ENST00000455509 3109 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXC11O43248 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXC11O43248 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXC11O43248 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXC11O43248 MIR19A-201ENST00000384878 82 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 SOD2P1-201ENST00000396543 562 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 RPL7P60-201ENST00000397636 735 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 RPS29P4-201ENST00000414733 161 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXC11O43248 AL356867.1-201ENST00000429623 299 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC011742.1-201ENST00000431448 434 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC11O43248 HMGN2P31-201ENST00000432430 273 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC098826.1-201ENST00000433943 471 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC129850.1-201ENST00000436203 508 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 HSPD1P21-201ENST00000436541 245 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 HMGN2P20-201ENST00000437531 273 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC11O43248 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXC11O43248 AC009961.3-201ENST00000449832 765 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 USP9YP12-201ENST00000450481 570 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXC11O43248 AL136097.1-201ENST00000456945 913 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC11O43248 RNU6-201P-201ENST00000517100 61 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC11O43248 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXC11O43248 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXC11O43248 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC11O43248 AL133153.1-201ENST00000557756 303 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC090877.1-201ENST00000561418 344 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC11O43248 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC11O43248 MIR5697-201ENST00000578045 78 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AF038458.1-201ENST00000588406 262 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC006116.10-201ENST00000591836 581 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC084757.4-201ENST00000616350 526 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC012314.7-201ENST00000619693 93 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC079684.1-201ENST00000621405 437 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AC026422.1-201ENST00000623961 452 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 AL136164.4-201ENST00000625013 2135 ntBASIC3.84□□□□□ -1.79
HOXC11O43248 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.84□□□□□ -1.79
HOXC11O43248 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXC11O43248 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
HOXC11O43248 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
HOXC11O43248 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
HOXC11O43248 AC090740.1-201ENST00000623193 2262 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXC11O43248 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC11O43248 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC11O43248 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
HOXC11O43248 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXC11O43248 MIR493-201ENST00000385254 89 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 RPL7P25-201ENST00000404151 721 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 TXNP7-201ENST00000406296 293 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 RN7SKP53-201ENST00000411337 315 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.83□□□□□ -1.8
HOXC11O43248 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC11O43248 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AC018630.2-202ENST00000422992 927 ntBASIC3.83□□□□□ -1.8
HOXC11O43248 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms