Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AC083863.1-201ENST00000438811 231 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 PGBD4P3-201ENST00000440731 581 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AL831737.1-201ENST00000441288 271 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC097493.1-201ENST00000463958 372 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC006511.1-201ENST00000470614 315 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC012170.1-201ENST00000495139 359 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC114981.1-201ENST00000503897 678 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC026726.1-201ENST00000512859 601 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 SNORA18.6-201ENST00000516792 115 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 Y_RNA.704-201ENST00000516851 102 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 OR5AP1P-201ENST00000529730 940 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC008752.3-201ENST00000588113 712 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC060780.3-201ENST00000589464 80 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC064836.2-201ENST00000609491 462 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC008250.2-201ENST00000615261 205 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC009033.1-201ENST00000624279 431 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AC068880.5-201ENST00000624331 290 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AL773545.4-201ENST00000637262 310 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 AL513478.4-201ENST00000641636 310 ntBASIC3.97□□□□□ -1.77
EBF3Q9H4W6 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
EBF3Q9H4W6 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
EBF3Q9H4W6 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.96□□□□□ -1.77
EBF3Q9H4W6 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.96□□□□□ -1.77
EBF3Q9H4W6 XPOTP1-201ENST00000443317 2398 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC107081.3-201ENST00000612715 2034 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 Y_RNA.295-201ENST00000364918 102 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 HMGN2P8-201ENST00000391458 268 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 EEF1A1P40-201ENST00000412883 573 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 RPL21P111-201ENST00000418453 477 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC083875.1-201ENST00000419509 405 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 RPS27AP14-201ENST00000422868 454 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 ZYG11AP1-201ENST00000430329 837 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AL358934.1-201ENST00000432346 324 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 RPS6P12-201ENST00000432491 726 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC104619.4-201ENST00000510773 249 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC018797.3-201ENST00000513388 1241 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 IGKV2D-19-201ENST00000523346 262 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 BNIP3P8-201ENST00000597863 560 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC244505.7-201ENST00000599675 272 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 SRGNP1-201ENST00000603392 451 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AL035413.2-201ENST00000604801 525 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC008277.2-201ENST00000605196 797 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC110741.2-201ENST00000605278 268 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC103710.4-201ENST00000609301 899 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC135507.2-201ENST00000612443 309 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC243773.3-201ENST00000613270 256 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AL591424.2-201ENST00000617023 128 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AC112487.2-201ENST00000637950 304 ntBASIC3.96□□□□□ -1.78
EBF3Q9H4W6 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.96□□□□□ -1.78
EBF3Q9H4W6 AL157700.1-201ENST00000561973 1432 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 Y_RNA.160-201ENST00000363677 92 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 Y_RNA.296-201ENST00000364930 108 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 RNU6-657P-201ENST00000383904 107 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
EBF3Q9H4W6 GSTA9P-201ENST00000406231 611 ntBASIC3.95□□□□□ -1.78
EBF3Q9H4W6 HMGB1P11-201ENST00000413899 637 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms