Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RNA5SP42-201ENST00000364278 115 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 RNU6-283P-201ENST00000364788 107 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 RNU6-744P-201ENST00000365557 107 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 RNU6-629P-201ENST00000384061 103 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 RNU6-1316P-201ENST00000384242 108 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AL138880.1-201ENST00000405824 642 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 Z98941.1-201ENST00000407764 100 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 MTCO1P17-201ENST00000411522 491 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC092447.6-201ENST00000414578 210 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 RPL21P112-201ENST00000434403 463 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 SETP11-201ENST00000473027 690 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AL049830.2-201ENST00000480072 201 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 BET1P1-201ENST00000482276 359 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC034222.1-201ENST00000494052 532 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 FCF1P8-201ENST00000510322 597 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 MTND5P4-201ENST00000514978 288 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 RNU6-714P-201ENST00000516963 103 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 MTCYBP41-201ENST00000528913 1123 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AP004247.1-201ENST00000531556 1289 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AL109653.1-201ENST00000603091 248 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC013444.2-201ENST00000603317 787 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AP000403.1-201ENST00000603349 851 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 Z99497.2-201ENST00000603634 310 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 BCRP9-201ENST00000605312 388 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC097468.3-201ENST00000607956 456 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC018755.4-201ENST00000619715 454 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC002550.2-201ENST00000621246 394 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 MIR3974-201ENST00000637126 96 ntBASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC3Q9BQI4 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.34□□□□□ -1.88
CCDC3Q9BQI4 AC093010.3-201ENST00000570269 15214 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC073073.2-201ENST00000609827 2578 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AL391417.1-201ENST00000404100 426 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 RN7SKP111-201ENST00000410349 271 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 HMGB1P11-201ENST00000413899 637 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC007390.1-201ENST00000415722 356 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC090960.1-201ENST00000421072 306 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 BEND7P1-201ENST00000422058 457 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC108734.1-201ENST00000439549 399 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 RPS3AP43-201ENST00000479743 781 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC093278.1-201ENST00000494700 600 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 RPL23AP55-201ENST00000498163 452 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 OR2A20P-203ENST00000498397 1268 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 HMGB3P15-201ENST00000507326 574 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC034159.1-201ENST00000513885 583 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC106038.2-201ENST00000520706 568 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AKIRIN1P1-201ENST00000547384 544 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 CR383656.7-201ENST00000548164 174 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 SETP2-201ENST00000553886 926 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 PCMTD1P2-201ENST00000565017 355 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC106782.4-201ENST00000568264 210 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 MIR3690-201ENST00000580266 75 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 MIR4276-201ENST00000584832 70 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AL606834.2-201ENST00000602954 668 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC012669.1-201ENST00000603209 283 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC006254.3-201ENST00000603353 884 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 MTCYBP22-201ENST00000603788 447 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms