Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC073587.1-201ENST00000447093 876 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RPL12P25-201ENST00000455592 494 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RPS23P3-201ENST00000470993 430 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC139453.3-201ENST00000493276 369 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC009902.1-201ENST00000519351 183 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 ATP5F1P5-201ENST00000526403 760 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC009643.1-201ENST00000532030 391 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC027369.5-201ENST00000533838 755 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 HMGB1P14-201ENST00000557424 591 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC051619.2-201ENST00000559063 397 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC053481.4-201ENST00000583164 216 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC068790.4-201ENST00000602474 263 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 FO393422.1-201ENST00000603908 708 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AL160281.1-201ENST00000605307 311 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 RNU6-6P-201ENST00000606623 107 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC010632.3-201ENST00000611377 369 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AL078596.1-201ENST00000624856 447 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 SNORA17.5-201ENST00000630429 132 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC140134.1-201ENST00000511830 3544 ntBASIC4.24□□□□□ -1.73
CCDC140Q96MF4 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC140Q96MF4 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 A2MP1-204ENST00000566278 4130 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 MIR323A-201ENST00000362199 86 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 RNU6-490P-201ENST00000362985 107 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 SNORA51.1-201ENST00000363243 140 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 RNU6-1309P-201ENST00000363305 108 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 RNA5SP178-201ENST00000410380 128 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 SYF2P2-201ENST00000417620 583 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AL390119.1-201ENST00000440329 312 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 FABP5P15-201ENST00000453566 214 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 YWHAEP1-201ENST00000453697 763 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 RN7SL174P-201ENST00000475578 289 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 RN7SL273P-201ENST00000481561 299 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC078817.1-201ENST00000492623 435 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 SNORA25.10-201ENST00000515926 124 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 SCARNA21.2-201ENST00000516600 166 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 RNA5SP291-201ENST00000517222 105 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC025755.1-201ENST00000521306 278 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC027544.3-201ENST00000535082 757 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC015720.2-201ENST00000567709 334 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 MIR4680-201ENST00000580906 66 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC132068.1-201ENST00000623805 459 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AC112200.1-201ENST00000625015 234 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 EOGT-210ENST00000615922 1931 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 CDC27P3-201ENST00000635418 1910 ntBASIC4.23□□□□□ -1.73
CCDC140Q96MF4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC4.23□□□□□ -1.73
CCDC140Q96MF4 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC140Q96MF4 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms