Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RPL27AP5-201ENST00000469428 449 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 RN7SL807P-201ENST00000470923 297 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 RPS27P26-201ENST00000494583 239 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 HSPD1P15-201ENST00000505573 1122 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC017037.2-201ENST00000513850 890 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-1225P-201ENST00000516336 65 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC023825.1-201ENST00000566704 1030 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC005498.1-201ENST00000592125 465 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 BNIP3P40-201ENST00000596017 556 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC069304.2-201ENST00000605154 435 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 RPL23AP88-201ENST00000605759 454 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC004067.1-201ENST00000608733 700 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC124016.2-201ENST00000610058 665 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AL591516.1-201ENST00000611326 274 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC073348.1-201ENST00000623002 331 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC079597.1-201ENST00000624306 508 ntBASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
ZNF540Q8NDQ6 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC093831.2-201ENST00000624393 3427 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC008264.2-201ENST00000610193 3731 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 RPL23AP57-201ENST00000332361 466 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-1257P-201ENST00000384625 110 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 MIR122-201ENST00000385044 85 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AL024507.1-201ENST00000412741 274 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 BX682237.1-201ENST00000415016 335 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 MTND4P3-201ENST00000417829 541 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 DBIP2-201ENST00000419076 262 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC018630.2-202ENST00000422992 927 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC244505.4-201ENST00000434905 287 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC005019.1-201ENST00000436455 431 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 SSXP5-201ENST00000443473 287 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 RN7SL75P-201ENST00000461926 281 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC008427.1-201ENST00000503102 655 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 SNORA70.18-201ENST00000516696 98 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-928P-201ENST00000516876 104 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-528P-201ENST00000516926 100 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 MIR4760-201ENST00000585040 80 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC006116.7-201ENST00000590141 756 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC013553.2-201ENST00000604244 589 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AL161756.2-201ENST00000604597 246 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AL590099.1-201ENST00000615276 138 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 SNORD39.4-201ENST00000620099 78 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AP003399.1-201ENST00000637534 361 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 AC007785.2-201ENST00000598627 1916 ntBASIC3.03□□□□□ -1.92
ZNF540Q8NDQ6 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 RPL17P50-201ENST00000396131 546 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 TAF9BP1-201ENST00000396646 746 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 RAP1BP1-201ENST00000412709 553 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 SDCBPP3-201ENST00000419629 891 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 USP9YP21-201ENST00000420603 432 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AL358075.3-201ENST00000426289 226 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AL714022.1-201ENST00000439897 151 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 BMI1P1-201ENST00000445879 941 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 RPL23AP20-201ENST00000447965 421 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 RBMY2UP-201ENST00000453474 324 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 RPL21P10-201ENST00000463521 490 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC116337.2-201ENST00000477662 156 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC108734.3-201ENST00000481241 1165 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AL049874.1-201ENST00000489560 388 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC026427.2-201ENST00000506228 536 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms