Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 MIR2682-201ENST00000580305 110 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 GLUD1P4-201ENST00000590914 418 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 BBIP1P1-201ENST00000602999 279 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 NUTF2P8-201ENST00000604593 363 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AL450472.3-201ENST00000615578 367 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC008443.7-201ENST00000622195 246 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC004808.1-201ENST00000627671 721 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 AL079343.1-201ENST00000572358 1771 ntBASIC3.23□□□□□ -1.89
HDDC3Q8N4P3 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AC087359.1-201ENST00000508335 1740 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AL355143.1-201ENST00000407101 841 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 TPMTP2-201ENST00000414372 726 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 TIMM9P2-201ENST00000419324 266 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AL356867.1-201ENST00000429623 299 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 CST9LP2-201ENST00000437612 320 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 MTCO2P25-201ENST00000447065 681 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 RPS29P12-201ENST00000460178 152 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 RPL7P5-201ENST00000471472 736 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AC021205.2-201ENST00000480069 347 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 CASP1P1-201ENST00000526345 212 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 ATP5A1P2-202ENST00000616464 443 ntBASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HDDC3Q8N4P3 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.21□□□□□ -1.89
HDDC3Q8N4P3 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 FTLP6-201ENST00000355274 422 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 MIR30E-201ENST00000362104 92 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 RNU6-76P-201ENST00000384060 104 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 Y_RNA.472-201ENST00000384322 102 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC022018.1-201ENST00000430685 241 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AL353705.1-201ENST00000433468 480 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC006539.3-201ENST00000454258 129 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 RNU7-136P-201ENST00000458819 69 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC091179.1-201ENST00000461606 579 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC010401.1-201ENST00000463867 348 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC097493.1-201ENST00000463958 372 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AP002884.2-201ENST00000471647 395 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC004924.1-201ENST00000480160 781 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 RPL30P5-201ENST00000494923 336 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 RPL21P131-201ENST00000497298 483 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 RNY4P37-201ENST00000516225 96 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 MIR2276-201ENST00000516886 89 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 RNU6-798P-201ENST00000516912 103 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 RNU6-528P-201ENST00000516926 100 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 PSMA2P1-201ENST00000526365 646 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 OR7K1P-201ENST00000546439 926 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC125611.2-201ENST00000551907 647 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AL512347.1-201ENST00000566420 503 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 BNIP3P27-201ENST00000599991 412 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AP001429.1-201ENST00000602568 530 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 AL049777.1-201ENST00000622740 518 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 LINC02211-204ENST00000642024 1070 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 FAM35BP-202ENST00000497389 3337 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.9
HDDC3Q8N4P3 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AL022578.1-201ENST00000439330 1433 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 OR1S2-201ENST00000302592 978 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 RNA5SP139-201ENST00000364340 117 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 117.8 ms