Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC239860.2-201ENST00000525886 270 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
SKA3Q8IX90 SNRPGP16-201ENST00000533275 226 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 MIR5680-201ENST00000577577 84 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 MIR3944-201ENST00000581277 108 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 AP001330.4-201ENST00000604350 154 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC004853.1-201ENST00000604902 698 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC107952.2-201ENST00000606048 486 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
SKA3Q8IX90 ANKRD62P1-201ENST00000434304 1623 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.78□□□□□ -1.96
SKA3Q8IX90 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SKA3Q8IX90 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 OR1S2-201ENST00000302592 978 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 RNU6-50P-201ENST00000362356 103 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AL008987.1-201ENST00000415528 237 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 TRBV24OR9-2-201ENST00000416632 435 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 MTCYBP38-201ENST00000417160 1123 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 MTCO2P5-201ENST00000422621 426 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 MTCO2P17-201ENST00000424336 677 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 DUTP6-201ENST00000425573 462 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AL451062.2-201ENST00000427515 271 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC006028.1-201ENST00000438379 402 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SKA3Q8IX90 RPL17P49-201ENST00000443728 411 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC002381.1-201ENST00000447049 280 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 USP9YP10-201ENST00000454868 628 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC034236.1-201ENST00000469891 373 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 HMGN2P13-201ENST00000476476 274 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SKA3Q8IX90 MLLT10P2-201ENST00000506434 249 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 KLHL2P1-201ENST00000508691 521 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC093281.2-201ENST00000510153 597 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 RNU1-143P-201ENST00000516296 146 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 RN7SKP265-201ENST00000516448 223 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 OR6C7P-201ENST00000547875 934 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 DUXAP1-201ENST00000556632 463 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 MTCO3P13-201ENST00000577757 781 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC061975.8-201ENST00000587058 721 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 AL031985.2-201ENST00000600955 480 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC004987.4-201ENST00000603383 338 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC112220.3-201ENST00000605502 502 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AL627309.6-201ENST00000606857 840 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 U1.23-201ENST00000610293 146 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AL591516.1-201ENST00000611326 274 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AC100793.4-201ENST00000613683 429 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 RNU1-68P-201ENST00000615382 146 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 AL596245.1-201ENST00000618994 362 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 U1.39-201ENST00000621562 146 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 CRYM-AS1-204ENST00000637983 556 ntBASIC2.78□□□□□ -1.96
SKA3Q8IX90 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SKA3Q8IX90 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
SKA3Q8IX90 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SKA3Q8IX90 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 MTND5P1-201ENST00000445440 1375 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
SKA3Q8IX90 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SKA3Q8IX90 SNORA4.1-201ENST00000364263 144 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 RNU6-952P-201ENST00000391164 108 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 RNU1-101P-201ENST00000391171 127 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL356131.1-201ENST00000405826 414 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 RNU4-47P-201ENST00000410876 114 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 MRPL50P2-201ENST00000416821 482 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 RPL39P40-201ENST00000445481 146 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 Z73417.1-201ENST00000447373 778 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AL353691.1-201ENST00000451332 387 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 UQCRHP3-201ENST00000451503 251 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 MEMO1P3-201ENST00000459811 302 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.77□□□□□ -1.97
SKA3Q8IX90 RN7SL807P-201ENST00000470923 297 ntBASIC2.77□□□□□ -1.97
SKA3Q8IX90 AC109925.1-201ENST00000478069 331 ntBASIC2.77□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms