Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.36□□□□□ -2.03
USP54Q70EL1 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.36□□□□□ -2.03
USP54Q70EL1 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.36□□□□□ -2.03
USP54Q70EL1 AP001180.3-201ENST00000582221 145 ntBASIC2.36□□□□□ -2.03
USP54Q70EL1 LLPHP1-201ENST00000603571 367 ntBASIC2.36□□□□□ -2.03
USP54Q70EL1 AC024560.3-201ENST00000608482 349 ntBASIC2.36□□□□□ -2.03
USP54Q70EL1 uc_338.9-201ENST00000617424 182 ntBASIC2.36□□□□□ -2.03
USP54Q70EL1 AC011978.2-201ENST00000569835 2054 ntBASIC2.36□□□□□ -2.03
USP54Q70EL1 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC2.36□□□□□ -2.03
USP54Q70EL1 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.36□□□□□ -2.03
USP54Q70EL1 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.36□□□□□ -2.03
USP54Q70EL1 RPL23AP33-201ENST00000442301 452 ntBASIC2.35□□□□□ -2.03
USP54Q70EL1 USP9YP15-201ENST00000442391 422 ntBASIC2.35□□□□□ -2.03
USP54Q70EL1 CDC42P1-201ENST00000456658 548 ntBASIC2.35□□□□□ -2.03
USP54Q70EL1 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
USP54Q70EL1 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.35□□□□□ -2.03
USP54Q70EL1 SNORA31.11-201ENST00000516528 139 ntBASIC2.35□□□□□ -2.03
USP54Q70EL1 ARL2BPP2-201ENST00000550907 489 ntBASIC2.35□□□□□ -2.03
USP54Q70EL1 CENPUP2-201ENST00000555897 1186 ntBASIC2.35□□□□□ -2.03
USP54Q70EL1 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC2.35□□□□□ -2.03
USP54Q70EL1 AL133393.1-201ENST00000603277 287 ntBASIC2.35□□□□□ -2.03
USP54Q70EL1 AL590099.1-201ENST00000615276 138 ntBASIC2.35□□□□□ -2.03
USP54Q70EL1 AC010872.1-201ENST00000624225 675 ntBASIC2.35□□□□□ -2.03
USP54Q70EL1 RPS15AP12-201ENST00000419498 388 ntBASIC2.34□□□□□ -2.03
USP54Q70EL1 ARL5AP2-201ENST00000444698 533 ntBASIC2.34□□□□□ -2.03
USP54Q70EL1 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
USP54Q70EL1 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC2.34□□□□□ -2.03
USP54Q70EL1 USP9YP10-201ENST00000454868 628 ntBASIC2.34□□□□□ -2.03
USP54Q70EL1 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.34□□□□□ -2.03
USP54Q70EL1 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
USP54Q70EL1 RNU6-319P-201ENST00000516025 108 ntBASIC2.34□□□□□ -2.03
USP54Q70EL1 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC2.34□□□□□ -2.03
USP54Q70EL1 AC027458.1-201ENST00000563639 613 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
USP54Q70EL1 AC116563.2-201ENST00000624751 535 ntBASIC2.34□□□□□ -2.03
USP54Q70EL1 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.34□□□□□ -2.03
USP54Q70EL1 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.34□□□□□ -2.04
USP54Q70EL1 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.34□□□□□ -2.04
USP54Q70EL1 MTND2P16-201ENST00000419987 799 ntBASIC2.34□□□□□ -2.04
USP54Q70EL1 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.34□□□□□ -2.04
USP54Q70EL1 AMD1P1-201ENST00000457220 922 ntBASIC2.34□□□□□ -2.04
USP54Q70EL1 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.34□□□□□ -2.04
USP54Q70EL1 AC020895.1-201ENST00000595362 272 ntBASIC2.34□□□□□ -2.04
USP54Q70EL1 AC139769.3-201ENST00000618383 175 ntBASIC2.34□□□□□ -2.04
USP54Q70EL1 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.34□□□□□ -2.04
USP54Q70EL1 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
USP54Q70EL1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP54Q70EL1 MIR1276-201ENST00000408707 83 ntBASIC2.33□□□□□ -2.04
USP54Q70EL1 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC2.33□□□□□ -2.04
USP54Q70EL1 AC104564.1-201ENST00000493028 407 ntBASIC2.33□□□□□ -2.04
USP54Q70EL1 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.33□□□□□ -2.04
USP54Q70EL1 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
USP54Q70EL1 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.33□□□□□ -2.04
USP54Q70EL1 AC117532.1-201ENST00000514638 323 ntBASIC2.33□□□□□ -2.04
USP54Q70EL1 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC2.33□□□□□ -2.04
USP54Q70EL1 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.33□□□□□ -2.04
USP54Q70EL1 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.33□□□□□ -2.04
USP54Q70EL1 MIR4446-201ENST00000578505 67 ntBASIC2.33□□□□□ -2.04
USP54Q70EL1 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.33□□□□□ -2.04
USP54Q70EL1 AC016252.1-201ENST00000609721 474 ntBASIC2.33□□□□□ -2.04
USP54Q70EL1 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USP54Q70EL1 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
USP54Q70EL1 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.32□□□□□ -2.04
USP54Q70EL1 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
USP54Q70EL1 AC092473.1-201ENST00000441098 221 ntBASIC2.32□□□□□ -2.04
USP54Q70EL1 AC090453.1-201ENST00000495560 436 ntBASIC2.32□□□□□ -2.04
USP54Q70EL1 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC2.32□□□□□ -2.04
USP54Q70EL1 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC2.32□□□□□ -2.04
USP54Q70EL1 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC2.32□□□□□ -2.04
USP54Q70EL1 AC012150.2-201ENST00000621300 544 ntBASIC2.32□□□□□ -2.04
USP54Q70EL1 Z82209.1-201ENST00000422141 2135 ntBASIC2.32□□□□□ -2.04
USP54Q70EL1 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.32□□□□□ -2.04
USP54Q70EL1 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
USP54Q70EL1 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
USP54Q70EL1 RNU2-68P-201ENST00000410878 191 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 RPL31P2-201ENST00000413849 377 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 AC114982.2-201ENST00000461396 358 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.31□□□□□ -2.04
USP54Q70EL1 ARL4AP2-201ENST00000507378 601 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.31□□□□□ -2.04
USP54Q70EL1 AL049838.1-201ENST00000563647 981 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 AC008687.2-201ENST00000597865 520 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 HMGN2P28-201ENST00000606102 262 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 VN1R74P-201ENST00000613259 503 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.31□□□□□ -2.04
USP54Q70EL1 RN7SKP101-201ENST00000411376 320 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 BX510359.4-201ENST00000423750 193 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 AC245517.4-201ENST00000448601 281 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 BX322784.1-201ENST00000455793 1077 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 RPL21P39-201ENST00000463605 483 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 AC012181.1-201ENST00000479895 423 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC2.31□□□□□ -2.04
USP54Q70EL1 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC2.31□□□□□ -2.04
USP54Q70EL1 Y_RNA.670-201ENST00000516255 105 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 RNA5SP490-201ENST00000517141 136 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.31□□□□□ -2.04
USP54Q70EL1 AC104581.2-201ENST00000572227 430 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.31□□□□□ -2.04
USP54Q70EL1 AP001542.2-201ENST00000593141 364 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 AC022079.2-201ENST00000619739 566 ntBASIC2.31□□□□□ -2.04
USP54Q70EL1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms