Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC006960.3-201ENST00000561845 705 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC087481.2-201ENST00000565492 330 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC007599.1-201ENST00000568688 1174 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 MIR5697-201ENST00000578045 78 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC073544.2-201ENST00000601155 540 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC104662.1-201ENST00000604448 511 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC064872.1-201ENST00000604823 1072 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC091167.4-201ENST00000605079 184 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC138749.5-201ENST00000611461 208 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC027807.2-201ENST00000616099 408 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC116165.2-201ENST00000616705 206 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC104010.1-201ENST00000616889 150 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 MIR6130-201ENST00000619419 109 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC243312.2-201ENST00000623340 601 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AL392088.2-201ENST00000637607 285 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AP001486.2-201ENST00000561652 5113 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 Y_RNA.51-201ENST00000362725 102 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 RNA5SP235-201ENST00000365411 114 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 RNU6-1181P-201ENST00000384191 106 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 RNU6-301P-201ENST00000384277 107 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 MIR607-201ENST00000385241 96 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 SNORA48.5-201ENST00000391143 135 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 MTCYBP36-201ENST00000404146 440 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 CCDC58P2-201ENST00000417131 366 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 MORF4L1P6-201ENST00000418771 268 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 FTH1P6-201ENST00000430768 320 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 MTND1P28-201ENST00000435623 950 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 RPS17P13-201ENST00000448974 407 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 IGKV2-38-201ENST00000517443 247 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 MTND4LP18-201ENST00000526864 291 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AP000873.5-201ENST00000533906 236 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC091516.1-201ENST00000549191 703 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC024909.2-201ENST00000553035 286 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC087752.4-201ENST00000605911 462 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AC011939.3-201ENST00000613686 466 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 MIR6715A-201ENST00000615929 79 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 MIR8057-201ENST00000620957 69 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 C2orf27A-204ENST00000623058 969 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 NCAPGP1-201ENST00000505112 1814 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AP001350.1-201ENST00000601906 1524 ntBASIC3.69□□□□□ -1.82
COL28A1Q2UY09 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.69□□□□□ -1.82
COL28A1Q2UY09 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 SNORA38.1-201ENST00000364172 131 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 RNA5SP189-201ENST00000364920 115 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 RNU6-533P-201ENST00000384144 107 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 RPL7P25-201ENST00000404151 721 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 RN7SKP142-201ENST00000411236 328 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 RPL21P32-201ENST00000419877 477 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AL121871.1-201ENST00000443413 436 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 RPL21P23-201ENST00000446654 460 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 RPL23AP41-201ENST00000484754 458 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC096751.1-202ENST00000502691 1067 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC091965.2-201ENST00000512324 613 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 MTCO3P28-201ENST00000513351 515 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC109635.4-202ENST00000531666 412 ntBASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.68□□□□□ -1.82
COL28A1Q2UY09 AC007458.1-201ENST00000542812 373 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms