Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 MTCYBP20-201ENST00000524239 1129 ntBASIC1.89□□□□□ -2.11
CHD3Q12873 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.89□□□□□ -2.11
CHD3Q12873 MIR4781-201ENST00000585250 76 ntBASIC1.89□□□□□ -2.11
CHD3Q12873 AC073111.2-201ENST00000605657 1075 ntBASIC1.89□□□□□ -2.11
CHD3Q12873 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC1.89□□□□□ -2.11
CHD3Q12873 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.88□□□□□ -2.11
CHD3Q12873 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CHD3Q12873 RNU2-21P-201ENST00000410368 188 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 RNU6-321P-201ENST00000410912 106 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC1.88□□□□□ -2.11
CHD3Q12873 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.88□□□□□ -2.11
CHD3Q12873 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 NDUFB4P6-201ENST00000436819 366 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 AL035407.2-201ENST00000454090 378 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 AC026464.5-201ENST00000562497 722 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 MIR5007-201ENST00000583098 95 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 AC011374.2-201ENST00000607135 526 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 MIR1291-201ENST00000627649 87 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 ZNF37BP-203ENST00000452306 1352 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 AC022336.2-201ENST00000568966 2538 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC1.88□□□□□ -2.11
CHD3Q12873 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.88□□□□□ -2.11
CHD3Q12873 SNORA67.1-201ENST00000364749 141 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 RNA5SP138-201ENST00000365098 114 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 SNORA6-201ENST00000384033 151 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 SNORA48.3-201ENST00000391081 134 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 RPL21P32-201ENST00000419877 477 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC1.88□□□□□ -2.11
CHD3Q12873 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 HMGN1P8-201ENST00000463578 288 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC1.88□□□□□ -2.11
CHD3Q12873 RNA5SP445-201ENST00000515889 115 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 HMGB1P46-201ENST00000520062 610 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 AC007115.1-201ENST00000546853 234 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CHD3Q12873 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC1.88□□□□□ -2.11
CHD3Q12873 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC1.88□□□□□ -2.11
CHD3Q12873 MIR6895-201ENST00000613497 78 ntBASIC1.88□□□□□ -2.11
CHD3Q12873 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC1.88□□□□□ -2.11
CHD3Q12873 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
CHD3Q12873 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.87□□□□□ -2.11
CHD3Q12873 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC1.87□□□□□ -2.11
CHD3Q12873 MIR518E-201ENST00000385252 88 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 MORF4L1P7-201ENST00000426038 703 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 RPL21P66-201ENST00000426566 466 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.87□□□□□ -2.11
CHD3Q12873 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC1.87□□□□□ -2.11
CHD3Q12873 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC1.87□□□□□ -2.11
CHD3Q12873 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC1.87□□□□□ -2.11
CHD3Q12873 CDC42P4-201ENST00000510507 563 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.87□□□□□ -2.11
CHD3Q12873 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.87□□□□□ -2.11
CHD3Q12873 AK6P1-201ENST00000540219 478 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 AP003717.3-201ENST00000544832 1180 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC1.87□□□□□ -2.11
CHD3Q12873 SNRPGP18-201ENST00000553000 214 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 AL138976.2-201ENST00000563989 694 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 AC115085.1-201ENST00000588924 229 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 ZNF92P3-201ENST00000596594 954 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 AC092650.2-201ENST00000619984 902 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
CHD3Q12873 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CHD3Q12873 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
CHD3Q12873 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CHD3Q12873 AC011460.1-201ENST00000636268 1834 ntBASIC1.87□□□□□ -2.11
CHD3Q12873 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC1.86□□□□□ -2.11
CHD3Q12873 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CHD3Q12873 AF274854.1-201ENST00000413236 615 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC1.86□□□□□ -2.11
CHD3Q12873 Z82205.1-201ENST00000428456 297 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 NDUFA5P10-201ENST00000432147 357 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.86□□□□□ -2.11
CHD3Q12873 ATP5F1P1-201ENST00000433775 569 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 AC010881.1-201ENST00000433830 235 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 RPS15AP28-201ENST00000435088 386 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 RPS7P2-201ENST00000435134 607 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 AC007677.1-201ENST00000445757 515 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 HMGB1P38-201ENST00000490557 577 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 RNU6-491P-201ENST00000516099 110 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 MTCYBP41-201ENST00000528913 1123 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 AP003385.6-201ENST00000531603 374 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC1.86□□□□□ -2.11
CHD3Q12873 MIR6840-201ENST00000611937 71 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.86□□□□□ -2.11
CHD3Q12873 AC244517.12-201ENST00000623581 663 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC1.86□□□□□ -2.11
CHD3Q12873 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC1.86□□□□□ -2.11
CHD3Q12873 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
CHD3Q12873 Y_RNA.796-201ENST00000364268 102 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 Y_RNA.799-201ENST00000364992 102 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CHD3Q12873 DEFB109C-201ENST00000382575 264 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 DEFB109B-201ENST00000382656 264 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 Y_RNA.508-201ENST00000384502 114 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CHD3Q12873 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC1.86□□□□□ -2.11
CHD3Q12873 WARS2P1-201ENST00000429678 537 ntBASIC1.86□□□□□ -2.11
CHD3Q12873 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC1.86□□□□□ -2.11
CHD3Q12873 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms