Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MCTS2P-201ENST00000394552 546 ntBASIC2.69□□□□□ -1.98
CUX1P39880 PAICSP7-201ENST00000419829 962 ntBASIC2.69□□□□□ -1.98
CUX1P39880 AL358075.3-201ENST00000426289 226 ntBASIC2.69□□□□□ -1.98
CUX1P39880 AL031659.1-201ENST00000447075 539 ntBASIC2.69□□□□□ -1.98
CUX1P39880 RPL7P31-201ENST00000450192 724 ntBASIC2.69□□□□□ -1.98
CUX1P39880 PPP1R2P5-201ENST00000457256 603 ntBASIC2.69□□□□□ -1.98
CUX1P39880 AC098583.1-201ENST00000480875 255 ntBASIC2.69□□□□□ -1.98
CUX1P39880 AC079203.1-201ENST00000487972 404 ntBASIC2.69□□□□□ -1.98
CUX1P39880 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CUX1P39880 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.69□□□□□ -1.98
CUX1P39880 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC2.69□□□□□ -1.98
CUX1P39880 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.69□□□□□ -1.98
CUX1P39880 AC105429.2-201ENST00000610567 517 ntBASIC2.69□□□□□ -1.98
CUX1P39880 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CUX1P39880 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
CUX1P39880 MTND1P23-201ENST00000416931 372 ntBASIC2.68□□□□□ -1.98
CUX1P39880 RPS4XP11-201ENST00000446897 772 ntBASIC2.68□□□□□ -1.98
CUX1P39880 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.68□□□□□ -1.98
CUX1P39880 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
CUX1P39880 AC092451.1-201ENST00000480211 153 ntBASIC2.68□□□□□ -1.98
CUX1P39880 AC006483.1-201ENST00000487308 313 ntBASIC2.68□□□□□ -1.98
CUX1P39880 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.68□□□□□ -1.98
CUX1P39880 AL161670.1-201ENST00000554348 137 ntBASIC2.68□□□□□ -1.98
CUX1P39880 AC015720.1-201ENST00000565251 277 ntBASIC2.68□□□□□ -1.98
CUX1P39880 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.68□□□□□ -1.98
CUX1P39880 MIR6895-201ENST00000613497 78 ntBASIC2.68□□□□□ -1.98
CUX1P39880 AC005296.1-201ENST00000616145 209 ntBASIC2.68□□□□□ -1.98
CUX1P39880 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
CUX1P39880 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
CUX1P39880 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.68□□□□□ -1.98
CUX1P39880 HMGB3P2-201ENST00000411913 584 ntBASIC2.68□□□□□ -1.98
CUX1P39880 XKRYP4-201ENST00000414395 483 ntBASIC2.68□□□□□ -1.98
CUX1P39880 SNRPFP2-201ENST00000440710 251 ntBASIC2.68□□□□□ -1.98
CUX1P39880 XKRYP5-201ENST00000449659 483 ntBASIC2.68□□□□□ -1.98
CUX1P39880 HSPE1P22-201ENST00000456856 327 ntBASIC2.68□□□□□ -1.98
CUX1P39880 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.68□□□□□ -1.98
CUX1P39880 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.68□□□□□ -1.98
CUX1P39880 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.68□□□□□ -1.98
CUX1P39880 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.68□□□□□ -1.98
CUX1P39880 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CUX1P39880 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.67□□□□□ -1.98
CUX1P39880 Z82195.2-201ENST00000612348 18351 ntBASIC2.67□□□□□ -1.98
CUX1P39880 TPT1P14-201ENST00000448018 505 ntBASIC2.67□□□□□ -1.98
CUX1P39880 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
CUX1P39880 AC021146.7-201ENST00000509604 775 ntBASIC2.67□□□□□ -1.98
CUX1P39880 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.67□□□□□ -1.98
CUX1P39880 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.67□□□□□ -1.98
CUX1P39880 MIR3199-1-201ENST00000582434 88 ntBASIC2.67□□□□□ -1.98
CUX1P39880 MIR4452-201ENST00000583004 71 ntBASIC2.67□□□□□ -1.98
CUX1P39880 DUXAP9-208ENST00000622815 614 ntBASIC2.67□□□□□ -1.98
CUX1P39880 AC098679.5-201ENST00000624394 571 ntBASIC2.67□□□□□ -1.98
CUX1P39880 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.67□□□□□ -1.98
CUX1P39880 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CUX1P39880 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.66□□□□□ -1.98
CUX1P39880 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.66□□□□□ -1.98
CUX1P39880 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.66□□□□□ -1.98
CUX1P39880 RAB9AP5-201ENST00000437794 597 ntBASIC2.66□□□□□ -1.98
CUX1P39880 RAB9AP2-201ENST00000443911 597 ntBASIC2.66□□□□□ -1.98
CUX1P39880 AC108734.3-201ENST00000481241 1165 ntBASIC2.66□□□□□ -1.98
CUX1P39880 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.66□□□□□ -1.98
CUX1P39880 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.66□□□□□ -1.98
CUX1P39880 AC098848.2-201ENST00000588023 330 ntBASIC2.66□□□□□ -1.98
CUX1P39880 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.66□□□□□ -1.98
CUX1P39880 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
CUX1P39880 U3.15-201ENST00000365398 212 ntBASIC2.65□□□□□ -1.99
CUX1P39880 RNA5SP167-201ENST00000365461 116 ntBASIC2.65□□□□□ -1.99
CUX1P39880 MTND4LP22-201ENST00000508209 276 ntBASIC2.65□□□□□ -1.99
CUX1P39880 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.65□□□□□ -1.99
CUX1P39880 AC104115.2-201ENST00000523026 687 ntBASIC2.65□□□□□ -1.99
CUX1P39880 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.65□□□□□ -1.99
CUX1P39880 AP001029.3-201ENST00000588063 596 ntBASIC2.65□□□□□ -1.99
CUX1P39880 PVT1_3.1-201ENST00000620853 95 ntBASIC2.65□□□□□ -1.99
CUX1P39880 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
CUX1P39880 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.65□□□□□ -1.99
CUX1P39880 RNY1-201ENST00000364228 113 ntBASIC2.64□□□□□ -1.99
CUX1P39880 RNU2-37P-201ENST00000410695 177 ntBASIC2.64□□□□□ -1.99
CUX1P39880 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
CUX1P39880 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.64□□□□□ -1.99
CUX1P39880 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.64□□□□□ -1.99
CUX1P39880 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.64□□□□□ -1.99
CUX1P39880 AP004242.1-201ENST00000533701 349 ntBASIC2.64□□□□□ -1.99
CUX1P39880 ZNF192P1-203ENST00000565888 810 ntBASIC2.64□□□□□ -1.99
CUX1P39880 AC008687.2-201ENST00000597865 520 ntBASIC2.64□□□□□ -1.99
CUX1P39880 AC011978.2-201ENST00000569835 2054 ntBASIC2.64□□□□□ -1.99
CUX1P39880 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.64□□□□□ -1.99
CUX1P39880 RNU6-356P-201ENST00000384140 107 ntBASIC2.63□□□□□ -1.99
CUX1P39880 MTND2P16-201ENST00000419987 799 ntBASIC2.63□□□□□ -1.99
CUX1P39880 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.63□□□□□ -1.99
CUX1P39880 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC2.63□□□□□ -1.99
CUX1P39880 AC022431.1-201ENST00000450941 438 ntBASIC2.63□□□□□ -1.99
CUX1P39880 RNU1-123P-201ENST00000458950 160 ntBASIC2.63□□□□□ -1.99
CUX1P39880 AC012170.1-201ENST00000495139 359 ntBASIC2.63□□□□□ -1.99
CUX1P39880 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.63□□□□□ -1.99
CUX1P39880 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.63□□□□□ -1.99
CUX1P39880 PSMA3P-201ENST00000555485 635 ntBASIC2.63□□□□□ -1.99
CUX1P39880 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.63□□□□□ -1.99
CUX1P39880 AL049779.4-201ENST00000604500 156 ntBASIC2.63□□□□□ -1.99
CUX1P39880 AC116447.1-201ENST00000613153 453 ntBASIC2.63□□□□□ -1.99
CUX1P39880 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CUX1P39880 MTND5P12-201ENST00000502851 1449 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms