Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
MSX2P35548 SSXP10-201ENST00000402595 565 ntBASIC4.34□□□□□ -1.71
MSX2P35548 U3.36-201ENST00000408418 213 ntBASIC4.34□□□□□ -1.71
MSX2P35548 RPL31P2-201ENST00000413849 377 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AC245054.2-201ENST00000415639 319 ntBASIC4.34□□□□□ -1.71
MSX2P35548 BEND7P1-201ENST00000422058 457 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.34□□□□□ -1.71
MSX2P35548 AC018630.2-202ENST00000422992 927 ntBASIC4.34□□□□□ -1.71
MSX2P35548 CHIAP3-201ENST00000423668 1133 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.34□□□□□ -1.71
MSX2P35548 MED13P1-201ENST00000428342 171 ntBASIC4.34□□□□□ -1.71
MSX2P35548 HLA-N-201ENST00000437516 135 ntBASIC4.34□□□□□ -1.71
MSX2P35548 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.34□□□□□ -1.71
MSX2P35548 RNU7-152P-201ENST00000458982 64 ntBASIC4.34□□□□□ -1.71
MSX2P35548 VN1R17P-201ENST00000472048 1090 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AC126389.1-201ENST00000477436 290 ntBASIC4.34□□□□□ -1.71
MSX2P35548 BX284632.1-201ENST00000478218 541 ntBASIC4.34□□□□□ -1.71
MSX2P35548 RN7SL826P-201ENST00000479724 288 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AL163540.1-201ENST00000485382 386 ntBASIC4.34□□□□□ -1.71
MSX2P35548 HMGB3P15-201ENST00000507326 574 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.34□□□□□ -1.71
MSX2P35548 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.34□□□□□ -1.71
MSX2P35548 AP001804.3-201ENST00000525146 880 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.34□□□□□ -1.71
MSX2P35548 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.34□□□□□ -1.71
MSX2P35548 AC128657.1-201ENST00000549459 145 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.34□□□□□ -1.71
MSX2P35548 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.34□□□□□ -1.71
MSX2P35548 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
MSX2P35548 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.34□□□□□ -1.71
MSX2P35548 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.34□□□□□ -1.71
MSX2P35548 HMGB2P1-201ENST00000591146 634 ntBASIC4.34□□□□□ -1.71
MSX2P35548 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
MSX2P35548 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.34□□□□□ -1.71
MSX2P35548 AC010201.1-201ENST00000605051 540 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AC124303.1-201ENST00000605703 360 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AL512329.2-201ENST00000607350 548 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.34□□□□□ -1.71
MSX2P35548 uc_338.15-201ENST00000615470 191 ntBASIC4.34□□□□□ -1.71
MSX2P35548 MIR7155-201ENST00000615925 56 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AC099669.2-201ENST00000616549 437 ntBASIC4.34□□□□□ -1.71
MSX2P35548 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.34□□□□□ -1.71
MSX2P35548 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
MSX2P35548 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
MSX2P35548 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
MSX2P35548 AL138713.1-201ENST00000624026 2130 ntBASIC4.34□□□□□ -1.71
MSX2P35548 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
MSX2P35548 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
MSX2P35548 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
MSX2P35548 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
MSX2P35548 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
MSX2P35548 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.33□□□□□ -1.72
MSX2P35548 ZNF962P-201ENST00000443465 3140 ntBASIC4.33□□□□□ -1.72
MSX2P35548 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.33□□□□□ -1.72
MSX2P35548 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC4.33□□□□□ -1.72
MSX2P35548 NXPH1-205ENST00000602349 1953 ntBASIC4.33□□□□□ -1.72
MSX2P35548 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
MSX2P35548 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.33□□□□□ -1.72
MSX2P35548 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
MSX2P35548 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.33□□□□□ -1.72
MSX2P35548 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
MSX2P35548 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC4.33□□□□□ -1.72
MSX2P35548 RNU6-511P-201ENST00000363496 107 ntBASIC4.33□□□□□ -1.72
MSX2P35548 RN7SKP44-201ENST00000363602 316 ntBASIC4.33□□□□□ -1.72
MSX2P35548 Y_RNA.373-201ENST00000365600 103 ntBASIC4.33□□□□□ -1.72
MSX2P35548 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
MSX2P35548 Y_RNA.395-201ENST00000383945 109 ntBASIC4.33□□□□□ -1.72
MSX2P35548 RNU1-44P-201ENST00000384453 163 ntBASIC4.33□□□□□ -1.72
MSX2P35548 SNORA70E-201ENST00000384492 135 ntBASIC4.33□□□□□ -1.72
MSX2P35548 RNY4P36-201ENST00000391116 96 ntBASIC4.33□□□□□ -1.72
MSX2P35548 BX323014.1-201ENST00000412876 237 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC4.33□□□□□ -1.72
MSX2P35548 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX2P35548 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.33□□□□□ -1.72
MSX2P35548 EZH2P1-201ENST00000431167 291 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX2P35548 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.33□□□□□ -1.72
MSX2P35548 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX2P35548 RNU7-180P-201ENST00000459240 63 ntBASIC4.33□□□□□ -1.72
MSX2P35548 RN7SL172P-201ENST00000460535 303 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC079804.1-201ENST00000461922 436 ntBASIC4.33□□□□□ -1.72
MSX2P35548 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
MSX2P35548 RPL23AP11-201ENST00000475260 469 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.33□□□□□ -1.72
MSX2P35548 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX2P35548 SNRPCP2-201ENST00000504370 475 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.33□□□□□ -1.72
MSX2P35548 RNU6-864P-201ENST00000516256 108 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC011979.2-201ENST00000527568 352 ntBASIC4.33□□□□□ -1.72
MSX2P35548 OR5B10P-201ENST00000532869 642 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX2P35548 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX2P35548 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC4.33□□□□□ -1.72
MSX2P35548 AL163153.1-201ENST00000554223 283 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX2P35548 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.33□□□□□ -1.72
MSX2P35548 AL118558.2-201ENST00000556294 238 ntBASIC4.33□□□□□ -1.72
MSX2P35548 NCAPGP2-201ENST00000557911 754 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC006270.2-201ENST00000578523 652 ntBASIC4.33□□□□□ -1.72
MSX2P35548 AC011447.4-201ENST00000587562 111 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms