Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CIITAP33076 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
CIITAP33076 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CIITAP33076 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CIITAP33076 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.05□□□□□ -1.76
CIITAP33076 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.05□□□□□ -1.76
CIITAP33076 AL365440.1-201ENST00000436135 2167 ntBASIC4.05□□□□□ -1.76
CIITAP33076 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.05□□□□□ -1.76
CIITAP33076 SNORA31-201ENST00000362607 130 ntBASIC4.05□□□□□ -1.76
CIITAP33076 RNU6-335P-201ENST00000364563 113 ntBASIC4.05□□□□□ -1.76
CIITAP33076 RNU6-283P-201ENST00000364788 107 ntBASIC4.05□□□□□ -1.76
CIITAP33076 RNU6-259P-201ENST00000383999 107 ntBASIC4.05□□□□□ -1.76
CIITAP33076 MIR320C1-201ENST00000408566 88 ntBASIC4.05□□□□□ -1.76
CIITAP33076 MIR1183-201ENST00000408856 89 ntBASIC4.05□□□□□ -1.76
CIITAP33076 RNA5SP56-201ENST00000410277 118 ntBASIC4.05□□□□□ -1.76
CIITAP33076 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.05□□□□□ -1.76
CIITAP33076 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.05□□□□□ -1.76
CIITAP33076 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.05□□□□□ -1.76
CIITAP33076 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.05□□□□□ -1.76
CIITAP33076 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC4.05□□□□□ -1.76
CIITAP33076 AC244505.5-201ENST00000443639 207 ntBASIC4.05□□□□□ -1.76
CIITAP33076 RPL21P23-201ENST00000446654 460 ntBASIC4.05□□□□□ -1.76
CIITAP33076 AC002381.1-201ENST00000447049 280 ntBASIC4.05□□□□□ -1.76
CIITAP33076 USP9YP12-201ENST00000450481 570 ntBASIC4.05□□□□□ -1.76
CIITAP33076 AC093392.2-201ENST00000450682 337 ntBASIC4.05□□□□□ -1.76
CIITAP33076 RGS5-217ENST00000451759 835 ntTSL 3 BASIC4.05□□□□□ -1.76
CIITAP33076 MTCO3P20-201ENST00000454926 688 ntBASIC4.05□□□□□ -1.76
CIITAP33076 LARP1BP2-201ENST00000486594 519 ntBASIC4.05□□□□□ -1.76
CIITAP33076 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.05□□□□□ -1.76
CIITAP33076 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.05□□□□□ -1.76
CIITAP33076 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CIITAP33076 SNORA70.18-201ENST00000516696 98 ntBASIC4.05□□□□□ -1.76
CIITAP33076 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC4.05□□□□□ -1.76
CIITAP33076 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.05□□□□□ -1.76
CIITAP33076 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CIITAP33076 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.05□□□□□ -1.76
CIITAP33076 MIR3913-1-201ENST00000577744 102 ntBASIC4.05□□□□□ -1.76
CIITAP33076 MIR3922-201ENST00000585192 84 ntBASIC4.05□□□□□ -1.76
CIITAP33076 AL669831.4-202ENST00000590817 238 ntBASIC4.05□□□□□ -1.76
CIITAP33076 AC006116.10-201ENST00000591836 581 ntBASIC4.05□□□□□ -1.76
CIITAP33076 AC025588.3-201ENST00000604182 274 ntBASIC4.05□□□□□ -1.76
CIITAP33076 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.05□□□□□ -1.76
CIITAP33076 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.05□□□□□ -1.76
CIITAP33076 AC138749.5-201ENST00000611461 208 ntBASIC4.05□□□□□ -1.76
CIITAP33076 AC116165.2-201ENST00000616705 206 ntBASIC4.05□□□□□ -1.76
CIITAP33076 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CIITAP33076 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.05□□□□□ -1.76
CIITAP33076 AC244258.1-201ENST00000637553 1071 ntBASIC4.05□□□□□ -1.76
CIITAP33076 AC099654.12-201ENST00000639868 649 ntBASIC4.05□□□□□ -1.76
CIITAP33076 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.05□□□□□ -1.76
CIITAP33076 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.05□□□□□ -1.76
CIITAP33076 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CIITAP33076 AC007656.2-201ENST00000624902 4547 ntBASIC4.05□□□□□ -1.76
CIITAP33076 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CIITAP33076 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CIITAP33076 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.04□□□□□ -1.76
CIITAP33076 SNORA71.3-201ENST00000362582 128 ntBASIC4.04□□□□□ -1.76
CIITAP33076 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.04□□□□□ -1.76
CIITAP33076 Y_RNA.598-201ENST00000410480 95 ntBASIC4.04□□□□□ -1.76
CIITAP33076 FCF1P9-201ENST00000412546 282 ntBASIC4.04□□□□□ -1.76
CIITAP33076 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC4.04□□□□□ -1.76
CIITAP33076 DBIP2-201ENST00000419076 262 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.04□□□□□ -1.76
CIITAP33076 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.04□□□□□ -1.76
CIITAP33076 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.04□□□□□ -1.76
CIITAP33076 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.04□□□□□ -1.76
CIITAP33076 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.04□□□□□ -1.76
CIITAP33076 VN1R34P-201ENST00000447387 883 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC005297.2-201ENST00000450430 606 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AL033528.1-201ENST00000453780 140 ntBASIC4.04□□□□□ -1.76
CIITAP33076 MTCO1P42-201ENST00000457379 726 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.04□□□□□ -1.76
CIITAP33076 KLF3P2-201ENST00000465138 268 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC023424.2-201ENST00000493479 777 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC106872.3-201ENST00000495104 446 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC4.04□□□□□ -1.76
CIITAP33076 AC110768.1-201ENST00000509222 400 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC024589.1-201ENST00000512207 263 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.04□□□□□ -1.76
CIITAP33076 MTND4LP26-201ENST00000518144 282 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.04□□□□□ -1.76
CIITAP33076 OR5G4P-201ENST00000525251 760 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC103843.2-201ENST00000530523 682 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC022878.1-201ENST00000530684 149 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC4.04□□□□□ -1.76
CIITAP33076 AP002453.2-201ENST00000533503 320 ntBASIC4.04□□□□□ -1.76
CIITAP33076 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
CIITAP33076 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.04□□□□□ -1.76
CIITAP33076 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.04□□□□□ -1.76
CIITAP33076 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC131902.3-201ENST00000611767 581 ntBASIC4.04□□□□□ -1.76
CIITAP33076 MIR6075-201ENST00000620782 95 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AC243312.2-201ENST00000623340 601 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AP003355.3-201ENST00000623465 114 ntBASIC4.04□□□□□ -1.76
CIITAP33076 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CIITAP33076 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CIITAP33076 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.04□□□□□ -1.76
CIITAP33076 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CIITAP33076 MTND5P26-201ENST00000426018 1752 ntBASIC4.04□□□□□ -1.76
CIITAP33076 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms