Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.43□□□□□ -1.86
HOXD3P31249 CBX3P1-201ENST00000325243 554 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 RNU1-94P-201ENST00000362627 173 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 U3.11-201ENST00000364476 212 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 RNU1-64P-201ENST00000365443 163 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
HOXD3P31249 RPS26P8-201ENST00000393490 348 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 RNU2-36P-201ENST00000410361 191 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 RNU6-516P-201ENST00000411381 104 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 RPL23AP26-201ENST00000412728 464 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD3P31249 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD3P31249 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD3P31249 MTCYBP8-201ENST00000422855 651 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AC018630.2-202ENST00000422992 927 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD3P31249 RPL21P91-201ENST00000429231 479 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD3P31249 MRPS18BP2-201ENST00000434310 759 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 MTATP6P16-201ENST00000434543 526 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 SEPT14P3-201ENST00000439401 183 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD3P31249 AL732372.2-207ENST00000445840 183 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 SNRPGP6-201ENST00000451124 220 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 SEPT14P2-201ENST00000453405 183 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 SNRPGP5-201ENST00000456003 220 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AC108059.3-201ENST00000456388 214 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 PMCHL2-203ENST00000457791 237 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 RNU7-59P-201ENST00000459101 61 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 RPL7P19-201ENST00000469948 618 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 RPL39P36-201ENST00000490784 156 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD3P31249 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD3P31249 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AC026427.2-201ENST00000506228 536 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 PCBP2P3-201ENST00000509726 843 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 PARP4P3-201ENST00000510265 317 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD3P31249 SEPT14P4-201ENST00000513445 186 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 Vault.1-201ENST00000516474 102 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AC008694.2-201ENST00000517591 306 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 HMGB1P41-201ENST00000520234 440 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 FO082796.1-201ENST00000523795 183 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 DEFB108D-201ENST00000527787 222 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AP003385.6-201ENST00000531603 374 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXD3P31249 RN7SL176P-201ENST00000580352 264 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXD3P31249 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD3P31249 AC105224.1-201ENST00000587055 421 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 UBE2V2P2-201ENST00000587677 504 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 NRBF2P5-201ENST00000603087 788 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AL031176.1-201ENST00000604554 466 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD3P31249 AC004825.2-201ENST00000616634 455 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXD3P31249 AL445567.2-201ENST00000618935 498 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 C2orf27A-204ENST00000623058 969 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 AC006020.1-201ENST00000420179 1854 ntBASIC3.43□□□□□ -1.86
HOXD3P31249 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.43□□□□□ -1.86
HOXD3P31249 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXD3P31249 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.43□□□□□ -1.86
HOXD3P31249 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD3P31249 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 MTND4P29-201ENST00000503122 1372 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD3P31249 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD3P31249 AC092435.4-201ENST00000623012 4159 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD3P31249 RNU6-1249P-201ENST00000363237 111 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 RNU6-511P-201ENST00000363496 107 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 Y_RNA.367-201ENST00000365544 101 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD3P31249 AL359837.1-201ENST00000381357 287 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 RNU1-63P-201ENST00000383902 164 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 RNU6-356P-201ENST00000384140 107 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXD3P31249 MIR1250-201ENST00000408098 113 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 RN7SKP159-201ENST00000410657 292 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 RNA5SP107-201ENST00000411358 122 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD3P31249 AC093106.2-201ENST00000428212 385 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD3P31249 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 AC079781.2-201ENST00000446424 169 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXD3P31249 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXD3P31249 HMGB3P30-201ENST00000457863 606 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 RNU7-63P-201ENST00000459054 62 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXD3P31249 UQCRHP4-201ENST00000471686 272 ntBASIC3.42□□□□□ -1.86
HOXD3P31249 AC078785.3-201ENST00000476607 425 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms