Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MTND5P4-201ENST00000514978 288 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 RNU6-347P-201ENST00000516658 105 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.28□□□□□ -2.04
COL5A3P25940 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.28□□□□□ -2.04
COL5A3P25940 HMGB1P51-201ENST00000605166 638 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 OR1S1-201ENST00000624470 978 ntBASIC2.28□□□□□ -2.04
COL5A3P25940 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC2.28□□□□□ -2.05
COL5A3P25940 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.28□□□□□ -2.05
COL5A3P25940 MTND4P13-201ENST00000402078 1023 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC2.28□□□□□ -2.05
COL5A3P25940 AC027673.1-201ENST00000456245 405 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 RNU6-1218P-201ENST00000458990 108 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 AC025033.1-201ENST00000463883 194 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 AC087190.1-201ENST00000484462 480 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 AC090543.1-201ENST00000492168 485 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 AC104564.1-201ENST00000493028 407 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.05
COL5A3P25940 RNU6-491P-201ENST00000516099 110 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 RNU6-889P-201ENST00000517189 103 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 AC026616.1-201ENST00000523157 525 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.28□□□□□ -2.05
COL5A3P25940 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.28□□□□□ -2.05
COL5A3P25940 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.28□□□□□ -2.05
COL5A3P25940 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.28□□□□□ -2.05
COL5A3P25940 AL118556.2-201ENST00000614375 824 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.28□□□□□ -2.05
COL5A3P25940 ZNF271P-202ENST00000465539 1970 ntBASIC2.28□□□□□ -2.05
COL5A3P25940 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.27□□□□□ -2.05
COL5A3P25940 OR5T3-201ENST00000303059 1023 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 SNORA31-201ENST00000362607 130 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 Y_RNA.122-201ENST00000363331 96 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 RNU6-670P-201ENST00000364312 104 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC2.27□□□□□ -2.05
COL5A3P25940 RPL23AP58-201ENST00000440453 469 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 AL590664.1-201ENST00000448065 339 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 ARPC3P2-201ENST00000457786 533 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC2.27□□□□□ -2.05
COL5A3P25940 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.27□□□□□ -2.05
COL5A3P25940 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC2.27□□□□□ -2.05
COL5A3P25940 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC2.27□□□□□ -2.05
COL5A3P25940 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
COL5A3P25940 MIR4458-201ENST00000578872 75 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 AC124283.4-201ENST00000581815 456 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 VN1R84P-201ENST00000593697 235 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 AL355816.1-201ENST00000607951 118 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
COL5A3P25940 AL589994.2-201ENST00000621124 579 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 AC138649.5-201ENST00000637456 137 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.27□□□□□ -2.05
COL5A3P25940 Z82209.1-201ENST00000422141 2135 ntBASIC2.27□□□□□ -2.05
COL5A3P25940 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
COL5A3P25940 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL5A3P25940 AL139276.1-201ENST00000311910 1001 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 AC073464.3-201ENST00000422564 712 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 ZFAND6P1-201ENST00000434138 605 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.26□□□□□ -2.05
COL5A3P25940 KPNA2P1-201ENST00000458289 1591 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL5A3P25940 AC068781.1-201ENST00000488231 618 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 PCNAP1-201ENST00000505363 709 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 RNU6-760P-201ENST00000516078 97 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL5A3P25940 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.26□□□□□ -2.05
COL5A3P25940 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC2.26□□□□□ -2.05
COL5A3P25940 AC011472.4-201ENST00000615848 491 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 AC091046.2-201ENST00000620775 665 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 AC104820.1-201ENST00000624183 307 ntBASIC2.26□□□□□ -2.05
COL5A3P25940 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
COL5A3P25940 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL5A3P25940 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL5A3P25940 RNU6-317P-201ENST00000384031 107 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 FGF7P8-201ENST00000402994 292 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC2.25□□□□□ -2.05
COL5A3P25940 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.25□□□□□ -2.05
COL5A3P25940 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.25□□□□□ -2.05
COL5A3P25940 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.25□□□□□ -2.05
COL5A3P25940 Z85994.2-201ENST00000434327 452 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 HIGD1AP11-201ENST00000438361 280 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.25□□□□□ -2.05
COL5A3P25940 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.25□□□□□ -2.05
COL5A3P25940 MLLT10P2-201ENST00000506434 249 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.25□□□□□ -2.05
COL5A3P25940 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.25□□□□□ -2.05
COL5A3P25940 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.25□□□□□ -2.05
COL5A3P25940 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.25□□□□□ -2.05
COL5A3P25940 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.25□□□□□ -2.05
COL5A3P25940 AL161713.1-201ENST00000555538 145 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 KATNBL1P1-201ENST00000605192 748 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
COL5A3P25940 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.25□□□□□ -2.05
COL5A3P25940 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.25□□□□□ -2.05
COL5A3P25940 AC026241.1-201ENST00000517873 2142 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
COL5A3P25940 RNU6-152P-201ENST00000384037 107 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AL589655.1-201ENST00000405398 482 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 RAD23BP2-201ENST00000416003 1207 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 TOMM22P1-201ENST00000418578 312 ntBASIC2.25□□□□□ -2.05
COL5A3P25940 AC023128.2-201ENST00000420880 1223 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms