Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 HMGB1P1-201ENST00000522557 636 ntBASIC1.93□□□□□ -2.1
TNFP01375 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.93□□□□□ -2.1
TNFP01375 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC1.93□□□□□ -2.1
TNFP01375 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
TNFP01375 AC103810.1-201ENST00000579873 453 ntBASIC1.93□□□□□ -2.1
TNFP01375 MIR5089-201ENST00000580047 84 ntBASIC1.93□□□□□ -2.1
TNFP01375 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.93□□□□□ -2.1
TNFP01375 MIR4769-201ENST00000584126 77 ntBASIC1.93□□□□□ -2.1
TNFP01375 AC011494.1-201ENST00000596454 237 ntBASIC1.93□□□□□ -2.1
TNFP01375 AC009314.1-201ENST00000603871 304 ntBASIC1.93□□□□□ -2.1
TNFP01375 AC025811.1-201ENST00000604312 472 ntBASIC1.93□□□□□ -2.1
TNFP01375 AP001521.1-201ENST00000609150 300 ntBASIC1.93□□□□□ -2.1
TNFP01375 AC093673.2-201ENST00000609674 331 ntBASIC1.93□□□□□ -2.1
TNFP01375 AC018755.4-201ENST00000619715 454 ntBASIC1.93□□□□□ -2.1
TNFP01375 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC1.93□□□□□ -2.1
TNFP01375 YWHAEP7-203ENST00000622054 312 ntBASIC1.93□□□□□ -2.1
TNFP01375 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
TNFP01375 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TNFP01375 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
TNFP01375 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.92□□□□□ -2.1
TNFP01375 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.92□□□□□ -2.1
TNFP01375 RNU6-76P-201ENST00000384060 104 ntBASIC1.92□□□□□ -2.1
TNFP01375 TAS2R15P-201ENST00000390674 928 ntBASIC1.92□□□□□ -2.1
TNFP01375 SNORA40.18-201ENST00000391200 128 ntBASIC1.92□□□□□ -2.1
TNFP01375 SNORA26.9-201ENST00000391322 122 ntBASIC1.92□□□□□ -2.1
TNFP01375 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.92□□□□□ -2.1
TNFP01375 AL031659.1-201ENST00000447075 539 ntBASIC1.92□□□□□ -2.1
TNFP01375 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC1.92□□□□□ -2.1
TNFP01375 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.92□□□□□ -2.1
TNFP01375 RPL5P13-201ENST00000462840 709 ntBASIC1.92□□□□□ -2.1
TNFP01375 RPS4XP6-201ENST00000477670 797 ntBASIC1.92□□□□□ -2.1
TNFP01375 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC1.92□□□□□ -2.1
TNFP01375 AC025768.1-201ENST00000510057 267 ntBASIC1.92□□□□□ -2.1
TNFP01375 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TNFP01375 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC1.92□□□□□ -2.1
TNFP01375 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TNFP01375 COX6CP5-201ENST00000527162 228 ntBASIC1.92□□□□□ -2.1
TNFP01375 AC068339.2-201ENST00000534395 618 ntBASIC1.92□□□□□ -2.1
TNFP01375 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TNFP01375 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
TNFP01375 OR4K7P-201ENST00000580232 945 ntBASIC1.92□□□□□ -2.1
TNFP01375 AL022099.1-201ENST00000604551 712 ntBASIC1.92□□□□□ -2.1
TNFP01375 AC034102.8-201ENST00000615146 484 ntBASIC1.92□□□□□ -2.1
TNFP01375 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
TNFP01375 MIR6076-201ENST00000617521 113 ntBASIC1.92□□□□□ -2.1
TNFP01375 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
TNFP01375 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
TNFP01375 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
TNFP01375 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
TNFP01375 AL359715.4-201ENST00000606629 1436 ntBASIC1.91□□□□□ -2.1
TNFP01375 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.91□□□□□ -2.1
TNFP01375 ZNF720P1-201ENST00000562403 1939 ntBASIC1.91□□□□□ -2.1
TNFP01375 AC022336.2-201ENST00000568966 2538 ntBASIC1.91□□□□□ -2.1
TNFP01375 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
TNFP01375 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC1.91□□□□□ -2.1
TNFP01375 MTND1P23-201ENST00000416931 372 ntBASIC1.91□□□□□ -2.1
TNFP01375 AC234782.4-201ENST00000417646 1048 ntBASIC1.91□□□□□ -2.1
TNFP01375 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC1.91□□□□□ -2.1
TNFP01375 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC1.91□□□□□ -2.1
TNFP01375 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.91□□□□□ -2.1
TNFP01375 Z77249.1-201ENST00000444622 1175 ntBASIC1.91□□□□□ -2.1
TNFP01375 AC007677.1-201ENST00000445757 515 ntBASIC1.91□□□□□ -2.1
TNFP01375 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC1.91□□□□□ -2.1
TNFP01375 AL157827.1-201ENST00000447622 132 ntBASIC1.91□□□□□ -2.1
TNFP01375 AC025033.1-201ENST00000463883 194 ntBASIC1.91□□□□□ -2.1
TNFP01375 AC090096.1-201ENST00000489168 390 ntBASIC1.91□□□□□ -2.1
TNFP01375 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1.91□□□□□ -2.1
TNFP01375 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC1.91□□□□□ -2.1
TNFP01375 MTCO1P47-201ENST00000523889 1271 ntBASIC1.91□□□□□ -2.1
TNFP01375 AC110588.1-201ENST00000559699 137 ntBASIC1.91□□□□□ -2.1
TNFP01375 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.91□□□□□ -2.1
TNFP01375 AC002984.1-201ENST00000591692 448 ntBASIC1.91□□□□□ -2.1
TNFP01375 MTCO2P22-201ENST00000603246 681 ntBASIC1.91□□□□□ -2.1
TNFP01375 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.91□□□□□ -2.1
TNFP01375 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
TNFP01375 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.9□□□□□ -2.1
TNFP01375 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
TNFP01375 RNU6-1251P-201ENST00000364502 107 ntBASIC1.9□□□□□ -2.11
TNFP01375 SET-203ENST00000372688 801 ntTSL 2 BASIC1.9□□□□□ -2.11
TNFP01375 SNORD65-201ENST00000391079 73 ntBASIC1.9□□□□□ -2.11
TNFP01375 EIF1AXP1-201ENST00000419267 435 ntBASIC1.9□□□□□ -2.11
TNFP01375 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC1.9□□□□□ -2.11
TNFP01375 ACTR3BP6-201ENST00000422332 1241 ntBASIC1.9□□□□□ -2.11
TNFP01375 MORF4L1P7-201ENST00000426038 703 ntBASIC1.9□□□□□ -2.11
TNFP01375 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC1.9□□□□□ -2.11
TNFP01375 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
TNFP01375 RPL7P54-201ENST00000438336 674 ntBASIC1.9□□□□□ -2.11
TNFP01375 AL021397.1-201ENST00000451806 248 ntBASIC1.9□□□□□ -2.11
TNFP01375 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.9□□□□□ -2.11
TNFP01375 MTCO3P44-201ENST00000510977 541 ntBASIC1.9□□□□□ -2.11
TNFP01375 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC1.9□□□□□ -2.11
TNFP01375 OR10V3P-201ENST00000525712 725 ntBASIC1.9□□□□□ -2.11
TNFP01375 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.9□□□□□ -2.11
TNFP01375 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.9□□□□□ -2.11
TNFP01375 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC1.9□□□□□ -2.11
TNFP01375 AC121758.2-201ENST00000553271 193 ntBASIC1.9□□□□□ -2.11
TNFP01375 AC090616.3-201ENST00000582184 217 ntBASIC1.9□□□□□ -2.11
TNFP01375 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC1.9□□□□□ -2.11
TNFP01375 AC009570.1-201ENST00000609599 745 ntBASIC1.9□□□□□ -2.11
TNFP01375 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms