Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 UBE2FP1-201ENST00000416536 447 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 YPEL5P1-201ENST00000419731 367 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXC11O43248 COX6CP12-201ENST00000446748 202 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 RNU7-59P-201ENST00000459101 61 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 AC055855.1-201ENST00000489563 579 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXC11O43248 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXC11O43248 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXC11O43248 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXC11O43248 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXC11O43248 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.87□□□□□ -1.79
HOXC11O43248 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXC11O43248 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.87□□□□□ -1.79
HOXC11O43248 AL359999.1-201ENST00000604513 294 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 AC069200.1-201ENST00000609511 323 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 MIR486-1-201ENST00000612171 68 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 U7.8-201ENST00000619968 63 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC11O43248 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXC11O43248 RPS4XP5-202ENST00000449995 1334 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.87□□□□□ -1.79
HOXC11O43248 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
HOXC11O43248 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.87□□□□□ -1.79
HOXC11O43248 SNORD46.1-201ENST00000364139 104 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 RNA5SP51-201ENST00000364750 119 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 RNU5E-5P-201ENST00000365379 116 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC11O43248 SNORD116-2-201ENST00000384274 95 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 SNORD116-6-201ENST00000384711 96 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
HOXC11O43248 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC11O43248 RPS20P2-201ENST00000402520 389 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 ATP5A1P2-201ENST00000412323 255 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC11O43248 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXC11O43248 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.86□□□□□ -1.79
HOXC11O43248 AL356535.1-201ENST00000440335 398 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.86□□□□□ -1.79
HOXC11O43248 AL590365.1-201ENST00000450788 243 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 RPS27AP8-201ENST00000452665 445 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 MTND2P24-201ENST00000453434 806 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 AC084198.1-201ENST00000477747 402 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AC106707.2-201ENST00000484182 374 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 AC104619.4-201ENST00000510773 249 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 RAC1P2-201ENST00000511164 579 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 RN7SKP18-201ENST00000516005 275 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 NARSP2-201ENST00000518524 679 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 DUXAP2-201ENST00000519198 589 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AP000857.1-201ENST00000532151 543 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.86□□□□□ -1.79
HOXC11O43248 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXC11O43248 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AC019176.2-201ENST00000611579 315 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AC090970.3-201ENST00000612566 866 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AL110115.1-201ENST00000614396 364 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AL603758.1-201ENST00000618654 241 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AC012150.2-201ENST00000621300 544 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 AC010149.2-201ENST00000637608 315 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC11O43248 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC11O43248 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 AL138713.1-201ENST00000624026 2130 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC11O43248 MTND4P4-201ENST00000439033 1366 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC11O43248 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC11O43248 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
HOXC11O43248 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXC11O43248 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXC11O43248 UBE3AP2-201ENST00000429033 2259 ntBASIC3.86□□□□□ -1.79
HOXC11O43248 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC11O43248 AC002546.1-201ENST00000588041 2504 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 ELL2P3-201ENST00000457883 1602 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC11O43248 SNORA23-201ENST00000365128 182 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AL109755.1-201ENST00000401791 649 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AL591034.1-201ENST00000407447 340 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC078974.1-201ENST00000411597 223 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXC11O43248 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXC11O43248 NPM1P11-201ENST00000417106 855 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC008850.1-201ENST00000427546 362 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 NEK4P1-201ENST00000433383 879 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 FTH1P1-201ENST00000437933 532 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 RPS3AP46-201ENST00000448352 682 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AL162389.1-201ENST00000449233 177 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 SNRPFP4-201ENST00000456366 242 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AC108059.3-201ENST00000456388 214 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 AL049714.1-201ENST00000466686 347 ntBASIC3.85□□□□□ -1.79
HOXC11O43248 HSPE1P6-201ENST00000479457 291 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms