Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
VPS28Q9UK41 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS28Q9UK41 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS28Q9UK41 RNU6-769P-201ENST00000384407 104 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 MIR218-2-201ENST00000385006 110 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AL359704.1-201ENST00000411586 781 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 HMGB3P23-201ENST00000414981 585 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 AL445669.1-201ENST00000426743 755 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 RPL35AP22-201ENST00000436855 335 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 PDSS1P2-201ENST00000449397 678 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 AP1S2P1-201ENST00000457344 379 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 AC006499.5-201ENST00000505037 514 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AC021678.1-201ENST00000505195 936 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
VPS28Q9UK41 RNU6-798P-201ENST00000516912 103 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 RN7SKP60-201ENST00000516985 239 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 AC011260.1-201ENST00000578420 472 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AP001004.1-201ENST00000582468 324 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 AC112187.2-201ENST00000604345 283 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 BCRP9-201ENST00000605312 388 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 U3.45-201ENST00000607547 219 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 AC007671.2-201ENST00000637344 619 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
VPS28Q9UK41 AC099063.3-201ENST00000642066 185 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS28Q9UK41 TNPO1P3-201ENST00000436471 2662 ntBASIC3.69□□□□□ -1.82
VPS28Q9UK41 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
VPS28Q9UK41 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC012321.1-201ENST00000561622 1588 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 SNORA71.3-201ENST00000362582 128 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS28Q9UK41 MIR184-201ENST00000384962 84 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 RNU6-754P-201ENST00000391166 107 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 TMEM167AP1-201ENST00000423409 219 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 AL593851.1-201ENST00000426171 157 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 MTND5P25-201ENST00000430499 799 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 NDUFB4P6-201ENST00000436819 366 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 MTCYBP39-201ENST00000437562 491 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 AL359385.1-201ENST00000456509 365 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 AL049830.2-201ENST00000480072 201 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
VPS28Q9UK41 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 ZNF415P1-201ENST00000582279 1166 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC006116.10-201ENST00000591836 581 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 BNIP3P33-201ENST00000598912 569 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC006077.1-201ENST00000604746 343 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC008121.2-201ENST00000614647 523 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 AL603758.1-201ENST00000618654 241 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC019226.1-201ENST00000625666 515 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 AC006378.2-201ENST00000623178 2476 ntBASIC3.68□□□□□ -1.82
VPS28Q9UK41 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VPS28Q9UK41 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
VPS28Q9UK41 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS28Q9UK41 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
VPS28Q9UK41 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 RNU6-432P-201ENST00000384196 109 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 MTHFD2P2-201ENST00000407725 247 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC011233.1-201ENST00000422812 283 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 AL356867.1-201ENST00000429623 299 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 NEK4P1-201ENST00000433383 879 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC073063.1-201ENST00000434352 607 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AL358232.1-201ENST00000448030 501 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 ATG12P2-201ENST00000456830 416 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 RPL31P60-201ENST00000478450 367 ntBASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.67□□□□□ -1.82
VPS28Q9UK41 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms