Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 RPL32P3-201ENST00000359025 275 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 RNA5SP52-201ENST00000362448 134 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 Y_RNA.153-201ENST00000363615 91 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 RNU4-66P-201ENST00000365199 138 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 RNU6-38P-201ENST00000384085 107 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 Y_RNA.530-201ENST00000384587 101 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 Y_RNA.552-201ENST00000384665 112 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 RNU6-952P-201ENST00000391164 108 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 HMGB1P17-201ENST00000403495 628 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 SPTLC1P2-201ENST00000407089 121 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC093151.1-201ENST00000427711 313 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 HMGB3P11-201ENST00000440127 604 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 RNU6-333P-201ENST00000459117 107 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 RNU7-66P-201ENST00000459469 62 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 PPIAP21-201ENST00000464473 501 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC004062.1-201ENST00000509926 645 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 OR51K1P-201ENST00000510214 950 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 RNU6-410P-201ENST00000517006 107 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC107934.1-201ENST00000522215 217 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AP000827.1-201ENST00000527814 258 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC133555.2-201ENST00000550213 292 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC093249.4-201ENST00000564755 259 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC209154.1-201ENST00000582156 337 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC022726.1-201ENST00000587475 207 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 OR7E18P-201ENST00000592589 702 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 TEX41-238ENST00000604253 709 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AL391813.2-201ENST00000609113 322 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 U2.1-201ENST00000618978 145 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC067931.1-201ENST00000624190 671 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 AL445437.1-201ENST00000623157 3087 ntBASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC39Q9UFE4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AL136164.3-201ENST00000624429 3978 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 U3.12-201ENST00000364498 214 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 RNU6-99P-201ENST00000364721 107 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 Y_RNA.455-201ENST00000384230 98 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 DPPA2P3-201ENST00000411853 655 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC006548.1-201ENST00000427470 102 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 FABP5P14-201ENST00000437273 393 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC011753.3-201ENST00000443436 406 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 PRPS1P1-201ENST00000445305 876 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AURKAPS2-201ENST00000454983 333 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AL161747.1-201ENST00000480068 358 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 PPBPP1-201ENST00000510807 373 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 RPL39P5-202ENST00000512505 151 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 LIAS-206ENST00000513731 826 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 RNU1-6P-201ENST00000516290 144 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 SCARNA24.1-201ENST00000516465 137 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC069240.1-201ENST00000548774 375 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 IMMP1LP2-201ENST00000552954 492 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 EDDM3DP-201ENST00000554692 434 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 RN7SL802P-201ENST00000577858 299 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 MIR5699-201ENST00000578903 90 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AF038458.1-201ENST00000588406 262 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 FAM27B-201ENST00000610601 213 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 CR392039.4-201ENST00000624968 501 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 PHKBP1-201ENST00000450951 1951 ntBASIC5.38□□□□□ -1.55
CCDC39Q9UFE4 API5P2-201ENST00000397055 1498 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms