Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 RNU6-761P-201ENST00000384148 107 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 RPL23AP32-201ENST00000395315 459 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 MIR1179-201ENST00000408703 91 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC012065.2-201ENST00000421295 375 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 COX6B1P7-201ENST00000430845 235 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 FCF1P1-201ENST00000432690 571 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC002486.1-201ENST00000435098 391 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 MTCYBP45-201ENST00000435243 565 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC005297.2-201ENST00000450430 606 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 CEACAMP4-201ENST00000457676 421 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 RNA5SP246-201ENST00000458909 119 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC069439.1-201ENST00000494739 167 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 SNORA31.9-201ENST00000516429 84 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 RNU6-358P-201ENST00000516564 75 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 Y_RNA.693-201ENST00000516641 110 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 SCARNA13-201ENST00000516672 275 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 SNORA20.3-201ENST00000516880 132 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC008752.3-201ENST00000588113 712 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC007687.1-201ENST00000602704 304 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AL365503.1-201ENST00000605247 905 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 OR10AB1P-201ENST00000609613 938 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC006133.1-201ENST00000617106 264 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC104985.2-201ENST00000620598 500 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC010149.2-201ENST00000637608 315 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 AC138915.3-201ENST00000562908 1389 ntBASIC4.26□□□□□ -1.73
DKK3Q9UBP4 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
DKK3Q9UBP4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 RNU6-28P-201ENST00000362378 107 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 Y_RNA.89-201ENST00000363031 102 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 RNU6-797P-201ENST00000363101 109 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 RNU6-1085P-201ENST00000363576 107 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 RNU6-878P-201ENST00000384578 110 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 RNU6-780P-201ENST00000391030 104 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 MRPL42P2-201ENST00000403169 426 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AL161631.1-201ENST00000417933 486 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 HMGB3P20-201ENST00000417997 600 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 ELOCP14-201ENST00000428070 331 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AL590233.1-201ENST00000430017 456 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 ELOCP7-201ENST00000439968 331 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AL136380.1-201ENST00000447970 162 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 DPPA3P1-201ENST00000448050 469 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AP1S2P1-201ENST00000457344 379 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 snoU13.24-201ENST00000458998 104 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 RPL7P15-201ENST00000461190 712 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AL136126.1-201ENST00000473603 402 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC078817.1-201ENST00000492623 435 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 RNF138P1-201ENST00000502765 546 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC093767.1-201ENST00000504523 156 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC107954.1-201ENST00000565906 727 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC025678.1-201ENST00000567861 338 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 MIR3944-201ENST00000581277 108 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 RNA5SP108-201ENST00000605921 117 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AL359314.1-201ENST00000616913 261 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC009318.4-201ENST00000620496 486 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 AC009268.2-201ENST00000621925 457 ntBASIC4.25□□□□□ -1.73
DKK3Q9UBP4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
DKK3Q9UBP4 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms