Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 RNU6-583P-201ENST00000516012 92 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 RNA5SP468-201ENST00000516782 93 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 FAM60DP-201ENST00000524174 632 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC024224.1-201ENST00000538284 609 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC005951.1-201ENST00000576706 485 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC010738.1-201ENST00000604970 987 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC005000.2-201ENST00000605468 310 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AL451074.6-201ENST00000608512 729 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC131235.4-201ENST00000609288 620 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AL355810.1-201ENST00000614629 552 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.31□□□□□ -1.88
VPS54Q9P1Q0 AL079305.1-201ENST00000623159 3008 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 SNORA18.3-201ENST00000384122 132 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 MIR181A2-201ENST00000384863 110 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 RNU1-101P-201ENST00000391171 127 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 DHFRP6-201ENST00000401776 268 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC009969.1-201ENST00000438726 172 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 MTCO2P25-201ENST00000447065 681 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 PTENP1-201ENST00000447117 1215 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 NIPA2P5-201ENST00000452282 464 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 RPL18AP17-201ENST00000455326 198 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 USP9YP25-201ENST00000457708 443 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 RPL21P8-201ENST00000465083 535 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC006483.1-201ENST00000487308 313 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC083906.5-201ENST00000503722 328 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 KLHL2P1-201ENST00000508691 521 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC116353.3-201ENST00000511215 249 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 RNU6-1095P-201ENST00000516148 108 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 RNU6-415P-201ENST00000516252 97 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC018630.1-201ENST00000541376 925 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 HSPE1P3-201ENST00000559254 309 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 SNORD84-203ENST00000584275 78 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AL451007.1-201ENST00000595491 289 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AP001330.4-201ENST00000604350 154 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC027449.1-201ENST00000608890 407 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AL020991.1-201ENST00000612314 373 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AL360181.4-201ENST00000621752 134 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC004009.2-201ENST00000623016 728 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC116618.1-201ENST00000634617 774 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 AC008264.2-201ENST00000610193 3731 ntBASIC3.3□□□□□ -1.88
VPS54Q9P1Q0 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AC099786.3-201ENST00000565735 1410 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 Y_RNA.465-201ENST00000384293 102 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 RNU6-636P-201ENST00000384598 107 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 USP9YP11-201ENST00000427537 717 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 DPPA2P1-201ENST00000428060 556 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AL590233.1-201ENST00000430017 456 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AC112653.1-201ENST00000443851 386 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 HMGN2P13-201ENST00000476476 274 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AC090453.1-201ENST00000495560 436 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 MLLT10P2-201ENST00000506434 249 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 XKRY-201ENST00000510392 1100 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 SNRPGP16-201ENST00000533275 226 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 REXO2-218ENST00000544827 880 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 CYCSP39-201ENST00000565821 309 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AL133393.1-201ENST00000603277 287 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AL390240.1-201ENST00000612950 384 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AL355493.4-201ENST00000618530 292 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 AC095031.1-201ENST00000623685 672 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.29□□□□□ -1.88
VPS54Q9P1Q0 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 RNU4-92P-201ENST00000363783 136 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 SAR1AP2-201ENST00000392696 594 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 CYCSP45-201ENST00000402289 315 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 RNU2-47P-201ENST00000410649 186 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AL592148.1-201ENST00000413568 445 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 SSR1P2-201ENST00000415208 787 ntBASIC3.28□□□□□ -1.88
VPS54Q9P1Q0 AL451074.5-201ENST00000415894 435 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms