Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RPL12P3-201ENST00000440080 396 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC073415.1-201ENST00000449240 153 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 CACYBPP2-201ENST00000453625 678 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC006512.1-201ENST00000468816 291 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 RN7SL826P-201ENST00000479724 288 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC233702.1-201ENST00000482905 502 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC135721.1-201ENST00000497954 479 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 OR7H2P-201ENST00000513483 306 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 PANCR-202ENST00000513690 448 ntTSL 2 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 DEFB108D-201ENST00000527787 222 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 OR5B19P-201ENST00000531766 928 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AL138976.2-201ENST00000563989 694 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC037471.2-201ENST00000564941 598 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AP001429.1-201ENST00000602568 530 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 IGHV3-29-201ENST00000604817 344 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC010680.4-201ENST00000605334 543 ntBASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
VSX1Q9NZR4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC244517.1-201ENST00000606030 2086 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 MTND4P23-201ENST00000447723 1363 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AL139276.1-201ENST00000311910 1001 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 RNU6-989P-201ENST00000362756 107 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 RNU6-39P-201ENST00000384344 107 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 Y_RNA.535-201ENST00000384612 99 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AL591416.1-201ENST00000404015 867 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 RNU2-47P-201ENST00000410649 186 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC007390.1-201ENST00000415722 356 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC005094.1-201ENST00000440420 368 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 RPL7P12-201ENST00000446719 750 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 MTND1P18-201ENST00000448191 573 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC092001.1-201ENST00000453012 261 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC009963.2-201ENST00000453431 138 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 snoU13.3-201ENST00000459441 104 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 SNORA19.2-201ENST00000516013 114 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 HMGB1P41-201ENST00000520234 440 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 FAM60DP-201ENST00000524174 632 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC243972.3-201ENST00000539655 198 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC091042.1-201ENST00000579213 173 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 MIR4775-201ENST00000581168 75 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC010525.2-201ENST00000590920 195 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC016727.1-205ENST00000605437 569 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC024940.4-201ENST00000605507 246 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 uc_338.32-201ENST00000615087 172 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC091905.2-201ENST00000623143 306 ntBASIC4.06□□□□□ -1.76
VSX1Q9NZR4 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.06□□□□□ -1.76
VSX1Q9NZR4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms