Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 AC002381.1-201ENST00000447049 280 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 MTCO1P27-201ENST00000448269 226 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 FAM133DP-201ENST00000464802 691 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 OR5H5P-201ENST00000503164 928 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC010460.1-201ENST00000507087 466 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC022861.1-201ENST00000522981 663 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC084824.1-201ENST00000550917 1005 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 OR4H12P-201ENST00000556269 907 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 NBR2-204ENST00000587322 63 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC006116.10-201ENST00000591836 581 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 BNIP3P23-201ENST00000599655 511 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 VN1R85P-201ENST00000601587 426 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 BBIP1P1-201ENST00000602999 279 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC004987.4-201ENST00000603383 338 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 MIR92B-201ENST00000607575 96 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC024941.1-201ENST00000612250 334 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AL158063.1-201ENST00000615349 536 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 MIR7844-201ENST00000616161 122 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 U4.6-201ENST00000621618 127 ntBASIC3.21□□□□□ -1.9
NDE1Q9NXR1 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
NDE1Q9NXR1 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 RNU6-600P-201ENST00000362524 99 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 RNU4-21P-201ENST00000362802 126 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 U3.4-201ENST00000363352 213 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 MTCYBP36-201ENST00000404146 440 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 RN7SKP123-201ENST00000410732 291 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC109780.2-201ENST00000413467 845 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC005517.2-201ENST00000424673 553 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 DPPA2P1-201ENST00000428060 556 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 PSMA6P3-201ENST00000428242 164 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 RPL23AP74-201ENST00000437246 471 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC009961.3-201ENST00000449832 765 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 BTF3P5-201ENST00000457252 467 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 SNORD105B-201ENST00000458770 79 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC091179.1-201ENST00000461606 579 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 RPL31P50-201ENST00000471002 296 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC108860.1-201ENST00000484521 383 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 FAM172BP-201ENST00000487497 1089 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC091965.2-201ENST00000512324 613 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 MTND5P4-201ENST00000514978 288 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC007115.1-201ENST00000546853 234 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 MIR5186-201ENST00000577504 120 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 MIR4474-201ENST00000579189 78 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AL031985.2-201ENST00000600955 480 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC092354.1-201ENST00000606057 376 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC097468.3-201ENST00000607956 456 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC004832.5-201ENST00000608677 401 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 uc_338.1-201ENST00000612113 180 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC073968.1-201ENST00000618594 637 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AL356321.1-201ENST00000621360 228 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AL353743.1-202ENST00000431724 1695 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
NDE1Q9NXR1 AC090337.1-201ENST00000579651 2074 ntBASIC3.2□□□□□ -1.9
NDE1Q9NXR1 ZNF734P-201ENST00000419494 1534 ntBASIC3.19□□□□□ -1.9
NDE1Q9NXR1 RNU6-989P-201ENST00000362756 107 ntBASIC3.19□□□□□ -1.9
NDE1Q9NXR1 RNU5F-7P-201ENST00000363696 115 ntBASIC3.19□□□□□ -1.9
NDE1Q9NXR1 AL359837.1-201ENST00000381357 287 ntBASIC3.19□□□□□ -1.9
NDE1Q9NXR1 Y_RNA.436-201ENST00000384097 102 ntBASIC3.19□□□□□ -1.9
NDE1Q9NXR1 RNU6-339P-201ENST00000384310 107 ntBASIC3.19□□□□□ -1.9
NDE1Q9NXR1 MT-TC-201ENST00000387405 66 ntBASIC3.19□□□□□ -1.9
NDE1Q9NXR1 RPL32P23-201ENST00000397237 405 ntBASIC3.19□□□□□ -1.9
NDE1Q9NXR1 AC025750.1-201ENST00000399891 379 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms