Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RN7SKP285-201ENST00000410137 318 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 RNU2-9P-201ENST00000410194 145 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 CCDC58P2-201ENST00000417131 366 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AL139413.1-201ENST00000421309 217 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 HMGB3P12-201ENST00000438745 556 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC079781.2-201ENST00000446424 169 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 RPS3AP50-201ENST00000487064 803 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 RPL36AP51-201ENST00000487216 318 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 RPL21P129-201ENST00000491732 478 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC135721.1-201ENST00000497954 479 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC108145.1-201ENST00000503770 153 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 RNU6-410P-201ENST00000517006 107 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC090151.1-201ENST00000520784 730 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 OR4R3P-201ENST00000525084 838 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC053481.4-201ENST00000583164 216 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC006130.2-201ENST00000586202 326 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC105224.1-201ENST00000587055 421 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC008752.3-201ENST00000588113 712 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC006254.3-201ENST00000603353 884 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 IGHV3-29-201ENST00000604817 344 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 TUG1_1.1-201ENST00000610654 145 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AL136313.1-201ENST00000624804 202 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 AC005609.4-201ENST00000625071 447 ntBASIC4.35□□□□□ -1.71
TDP1Q9NUW8 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
TDP1Q9NUW8 EOGT-210ENST00000615922 1931 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC018529.3-201ENST00000624212 2254 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 Y_RNA.38-201ENST00000362617 102 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 SNORD56.2-201ENST00000363242 71 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 U3.11-201ENST00000364476 212 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RNU6-877P-201ENST00000383868 107 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RNU6-637P-201ENST00000384050 107 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RNU6-432P-201ENST00000384196 109 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RNU6-74P-201ENST00000384235 107 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RNU6-837P-201ENST00000391056 108 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RNU6-908P-201ENST00000410160 94 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RNU6-712P-201ENST00000410558 100 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RBMY1KP-201ENST00000423480 476 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RPL7P2-201ENST00000427639 268 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC140076.1-201ENST00000449897 361 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC022364.2-201ENST00000457963 554 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC083798.1-201ENST00000472671 131 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RPS29P25-201ENST00000481709 171 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC104164.2-201ENST00000496953 495 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC068305.1-201ENST00000497406 726 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 RNU6-1095P-201ENST00000516148 108 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC011979.2-201ENST00000527568 352 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC022655.2-201ENST00000577280 318 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 BNIP3P30-201ENST00000601184 574 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AL162413.1-201ENST00000603198 110 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AL357078.3-201ENST00000607528 618 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AL020991.1-201ENST00000612314 373 ntBASIC4.34□□□□□ -1.71
TDP1Q9NUW8 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
TDP1Q9NUW8 AC005086.4-201ENST00000623065 213 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms