Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC084290.1-201ENST00000434995 374 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 RPL23AP58-201ENST00000440453 469 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 CBWD4P-201ENST00000445695 655 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 EXOSC3P1-201ENST00000448649 500 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 FCF1P8-201ENST00000510322 597 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 CDC42P4-201ENST00000510507 563 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 AC010587.2-201ENST00000511727 448 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 TRAV28-201ENST00000557548 323 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 AL596327.1-201ENST00000603629 213 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 AL357559.1-201ENST00000622228 274 ntBASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
CHMP4AQ9BY43 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 RNU6-744P-201ENST00000365557 107 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 RNU6-1316P-201ENST00000384242 108 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 RNU6-636P-201ENST00000384598 107 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AL391417.1-201ENST00000404100 426 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 RPL17P12-201ENST00000413391 526 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AC068533.1-201ENST00000418542 415 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AL645937.1-202ENST00000421799 937 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AC012498.1-201ENST00000424037 437 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AL159987.2-201ENST00000432754 307 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 PIGFP3-201ENST00000441918 722 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AL357552.1-201ENST00000445254 415 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 PRDX3P3-201ENST00000447765 522 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 RPL23AP67-201ENST00000465341 474 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 SUB1P1-201ENST00000524415 382 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AC112220.3-201ENST00000605502 502 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AL391834.2-201ENST00000609982 546 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 MIR7975-201ENST00000619350 68 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AC110801.1-201ENST00000623590 212 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 OR6C71P-202ENST00000641886 1107 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 AC068647.1-201ENST00000489539 2265 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 API5P2-201ENST00000397055 1498 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 OR4G2P-202ENST00000641004 1759 ntBASIC4.48□□□□□ -1.69
CHMP4AQ9BY43 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 MTCO1P12-201ENST00000414273 1543 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 PWAR6-201ENST00000552334 4618 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 FRG1CP-201ENST00000358464 769 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 RNA5SP354-201ENST00000391247 136 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 RNA5SP44-201ENST00000410446 133 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AL390023.1-201ENST00000428836 262 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 SAR1AP4-201ENST00000429225 591 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 RPS29P31-201ENST00000446147 164 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 MTND1P31-201ENST00000449206 961 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 MTCO3P16-201ENST00000454456 754 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AC087588.1-201ENST00000462203 316 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 RPL30P9-201ENST00000465586 330 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 RPL7P18-201ENST00000478965 734 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AC134050.1-201ENST00000495088 933 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AC009901.1-201ENST00000506703 541 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AC010374.2-201ENST00000512933 535 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AC110760.3-202ENST00000515177 371 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 SNORA70.19-201ENST00000516717 90 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AP002748.2-201ENST00000528671 348 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AC026333.2-201ENST00000542164 106 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 ELOCP35-201ENST00000604289 336 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 U6.105-201ENST00000637379 88 ntBASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
CHMP4AQ9BY43 AL138713.1-201ENST00000624026 2130 ntBASIC4.46□□□□□ -1.69
CHMP4AQ9BY43 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.46□□□□□ -1.69
CHMP4AQ9BY43 AC009902.3-201ENST00000606235 2172 ntBASIC4.46□□□□□ -1.7
CHMP4AQ9BY43 RNU1-33P-201ENST00000364249 162 ntBASIC4.46□□□□□ -1.7
CHMP4AQ9BY43 RNU6-283P-201ENST00000364788 107 ntBASIC4.46□□□□□ -1.7
CHMP4AQ9BY43 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
CHMP4AQ9BY43 AC106883.1-201ENST00000418805 562 ntBASIC4.46□□□□□ -1.7
CHMP4AQ9BY43 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms