Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
VPS35Q96QK1 AC090740.1-201ENST00000623193 2262 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC009812.4-201ENST00000569134 1805 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 RPL23AP57-201ENST00000332361 466 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 SNORA54-201ENST00000384281 123 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AL031679.1-201ENST00000400616 525 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 RN7SKP58-201ENST00000411010 305 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 MTCO2P5-201ENST00000422621 426 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 USP9YP36-201ENST00000424581 829 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC024082.2-201ENST00000434771 238 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 RPL21P2-201ENST00000440049 481 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 SDCBPP1-201ENST00000440192 890 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 COX6CP2-201ENST00000444980 225 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC007327.1-201ENST00000447461 264 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC104164.3-201ENST00000467363 1258 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC118282.1-201ENST00000506408 765 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC006499.2-201ENST00000513470 337 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC093677.1-201ENST00000514414 678 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 OR10V3P-201ENST00000525712 725 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS35Q96QK1 MTCYBP23-201ENST00000558717 1102 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 BNIP3P26-201ENST00000600827 554 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC013444.2-201ENST00000603317 787 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AL161756.2-201ENST00000604597 246 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AL390208.1-201ENST00000605885 644 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC006111.3-201ENST00000622137 383 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AC099654.9-201ENST00000637055 678 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 AL445984.1-201ENST00000637834 659 ntBASIC3.05□□□□□ -1.92
VPS35Q96QK1 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS35Q96QK1 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS35Q96QK1 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
VPS35Q96QK1 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
VPS35Q96QK1 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
VPS35Q96QK1 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS35Q96QK1 RNU6-28P-201ENST00000362378 107 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 RNU6-560P-201ENST00000364007 108 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 MIR491-201ENST00000384877 84 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 FAT1P1-201ENST00000406588 507 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 RN7SKP220-201ENST00000410611 288 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 MTATP6P20-201ENST00000414147 562 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AL592310.1-201ENST00000414330 671 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 RPL7P10-201ENST00000417407 739 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 RPS3AP37-201ENST00000419176 745 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AL354692.1-201ENST00000423044 315 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 USP9YP11-201ENST00000427537 717 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 MTATP6P4-201ENST00000427725 675 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AC104332.2-201ENST00000429959 156 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VPS35Q96QK1 EEF1A1P39-201ENST00000440791 250 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 RPL27AP5-201ENST00000469428 449 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 AC026427.2-201ENST00000506228 536 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AC008885.1-201ENST00000514930 301 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 AC055876.1-202ENST00000567053 138 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 MIR4325-201ENST00000583049 90 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 AP002826.1-201ENST00000608835 315 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.04□□□□□ -1.92
VPS35Q96QK1 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
VPS35Q96QK1 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS35Q96QK1 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
VPS35Q96QK1 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
VPS35Q96QK1 AC005539.1-201ENST00000443768 1479 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 CUL1P1-201ENST00000509510 2425 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
VPS35Q96QK1 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS35Q96QK1 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.03□□□□□ -1.92
VPS35Q96QK1 FRG1BP-201ENST00000278882 761 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
VPS35Q96QK1 AC073325.2-201ENST00000339545 159 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 SNORD67-201ENST00000390833 111 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 RNU1-101P-201ENST00000391171 127 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 RPS4XP3-201ENST00000398541 413 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 AL136310.1-201ENST00000404926 654 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 RPS3AP24-201ENST00000407896 734 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 SNORA11.1-201ENST00000408133 129 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 RNA5SP38-201ENST00000410750 119 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 TPMTP2-201ENST00000414372 726 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 BMS1P22-201ENST00000414726 313 ntBASIC3.03□□□□□ -1.92
VPS35Q96QK1 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms