Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC2.57□□□□□ -2
CCDC112Q8NEF3 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.57□□□□□ -2
CCDC112Q8NEF3 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.57□□□□□ -2
CCDC112Q8NEF3 AC103798.2-201ENST00000624292 632 ntBASIC2.57□□□□□ -2
CCDC112Q8NEF3 MIR1291-201ENST00000627649 87 ntBASIC2.57□□□□□ -2
CCDC112Q8NEF3 AC110079.1-202ENST00000635213 138 ntBASIC2.57□□□□□ -2
CCDC112Q8NEF3 AL356118.1-201ENST00000635272 1078 ntBASIC2.57□□□□□ -2
CCDC112Q8NEF3 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.57□□□□□ -2
CCDC112Q8NEF3 AC069528.2-201ENST00000624849 1991 ntBASIC2.57□□□□□ -2
CCDC112Q8NEF3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC112Q8NEF3 AC099654.7-201ENST00000635788 2127 ntBASIC2.57□□□□□ -2
CCDC112Q8NEF3 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC112Q8NEF3 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC112Q8NEF3 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC090740.1-201ENST00000623193 2262 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 RNA5SP68-201ENST00000363885 119 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 RNA5SP139-201ENST00000364340 117 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 SNORA1.3-201ENST00000384676 136 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC112Q8NEF3 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC112Q8NEF3 AL355994.1-201ENST00000424379 260 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC068135.1-201ENST00000446164 246 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 SNRPGP6-201ENST00000451124 220 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC090255.1-201ENST00000495779 349 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.56□□□□□ -2
CCDC112Q8NEF3 CBX3P3-201ENST00000508108 532 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 PRELID3BP4-201ENST00000515476 571 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC104057.1-201ENST00000515547 497 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC126177.3-201ENST00000551839 688 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC090616.3-201ENST00000582184 217 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC107294.1-201ENST00000609524 467 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC090116.1-201ENST00000615679 446 ntBASIC2.56□□□□□ -2
CCDC112Q8NEF3 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC2.56□□□□□ -2
CCDC112Q8NEF3 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CCDC112Q8NEF3 AL139276.1-201ENST00000311910 1001 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 RNA5SP37-201ENST00000365420 130 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 MIR627-201ENST00000384979 97 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 MIR493-201ENST00000385254 89 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AL356057.1-202ENST00000402263 756 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.55□□□□□ -2
CCDC112Q8NEF3 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.55□□□□□ -2
CCDC112Q8NEF3 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AL356320.2-201ENST00000417263 507 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC244453.4-201ENST00000419150 388 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC092685.1-201ENST00000447960 1243 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 HSPE1P6-201ENST00000479457 291 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 TRBV12-1-201ENST00000479785 344 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.55□□□□□ -2
CCDC112Q8NEF3 RNU6-551P-201ENST00000516661 103 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AP000867.2-201ENST00000532468 320 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC012414.2-201ENST00000559474 187 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC090312.2-201ENST00000582687 378 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC104984.5-201ENST00000586878 94 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC079610.2-201ENST00000604818 690 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 AC018926.3-201ENST00000618841 406 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.55□□□□□ -2
CCDC112Q8NEF3 AP000553.5-201ENST00000641933 54 ntBASIC2.55□□□□□ -2
CCDC112Q8NEF3 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC112Q8NEF3 SNORA67.1-201ENST00000364749 141 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
CCDC112Q8NEF3 AL359511.1-201ENST00000402970 211 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 RNU6-712P-201ENST00000410558 100 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 HMGB3P2-201ENST00000411913 584 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 FCF1P1-201ENST00000432690 571 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.54□□□□□ -2
CCDC112Q8NEF3 AC004263.1-201ENST00000479327 332 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 RNA5SP320-201ENST00000516263 124 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 AP001804.3-201ENST00000525146 880 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 AC121758.2-201ENST00000553271 193 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 DPRXP5-201ENST00000604662 539 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 AL590808.1-201ENST00000618696 141 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 AC025034.2-201ENST00000623264 286 ntBASIC2.54□□□□□ -2
CCDC112Q8NEF3 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC2.54□□□□□ -2
CCDC112Q8NEF3 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
CCDC112Q8NEF3 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
CCDC112Q8NEF3 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
CCDC112Q8NEF3 MTCO1P6-201ENST00000481192 1384 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms