Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNU6-1095P-201ENST00000516148 108 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.81□□□□□ -1.96
SKA3Q8IX90 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
SKA3Q8IX90 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC2.81□□□□□ -1.96
SKA3Q8IX90 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.81□□□□□ -1.96
SKA3Q8IX90 SETP7-201ENST00000552169 453 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC2.81□□□□□ -1.96
SKA3Q8IX90 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.81□□□□□ -1.96
SKA3Q8IX90 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC2.81□□□□□ -1.96
SKA3Q8IX90 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC2.81□□□□□ -1.96
SKA3Q8IX90 AL606834.2-201ENST00000602954 668 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 AL109653.1-201ENST00000603091 248 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 SRGNP1-201ENST00000603392 451 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 AL360181.4-201ENST00000621752 134 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.81□□□□□ -1.96
SKA3Q8IX90 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.81□□□□□ -1.96
SKA3Q8IX90 AL356473.1-201ENST00000406203 1408 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 AL022578.1-201ENST00000439330 1433 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 OR4G11P-202ENST00000642116 1414 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 ZNF876P-202ENST00000398732 1485 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 AC092447.7-201ENST00000422212 1621 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 AC097714.1-201ENST00000511272 1647 ntBASIC2.81□□□□□ -1.96
SKA3Q8IX90 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC005539.1-201ENST00000443768 1479 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 FAM133CP-201ENST00000332869 704 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 RNU6-1155P-201ENST00000363554 107 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 RNU6-343P-201ENST00000364709 104 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
SKA3Q8IX90 U3.19-201ENST00000390893 196 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 CYCSP45-201ENST00000402289 315 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 RNU6-757P-201ENST00000410334 100 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 RNU2-47P-201ENST00000410649 186 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 USP9YP33-201ENST00000412220 421 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 TPMTP2-201ENST00000414372 726 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 HMGB1P49-201ENST00000418882 569 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AL137014.1-201ENST00000420490 1226 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AL953862.1-201ENST00000423016 168 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 EZH2P1-201ENST00000431167 291 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 MTCYBP45-201ENST00000435243 565 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 USP9YP35-201ENST00000435696 412 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 SDCBPP1-201ENST00000440192 890 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AL591503.2-201ENST00000442314 1005 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 RPL36AP33-201ENST00000450395 310 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 MTCO3P11-201ENST00000455103 774 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 BX322784.1-201ENST00000455793 1077 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
SKA3Q8IX90 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AL358832.1-201ENST00000497800 389 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC104090.1-201ENST00000506341 1171 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC093677.1-201ENST00000514414 678 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 RNA5SP217-201ENST00000515959 91 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 OR5AK1P-201ENST00000524837 922 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC018630.1-201ENST00000541376 925 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 MTND1P24-201ENST00000552175 861 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 BBIP1P1-201ENST00000602999 279 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AL390208.1-201ENST00000605885 644 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 uc_338.25-201ENST00000613756 156 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 MIR7112-201ENST00000616126 65 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AL356585.4-201ENST00000623078 1229 ntBASIC2.8□□□□□ -1.96
SKA3Q8IX90 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.8□□□□□ -1.96
SKA3Q8IX90 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
SKA3Q8IX90 RNU6-28P-201ENST00000362378 107 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 RPL32P35-201ENST00000415214 394 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 HSPE1P1-201ENST00000421494 318 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 AL390023.1-201ENST00000428836 262 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 ELOCP23-201ENST00000452014 332 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC068724.1-201ENST00000487100 792 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC2.79□□□□□ -1.96
SKA3Q8IX90 SCARNA20.6-201ENST00000517251 106 ntBASIC2.79□□□□□ -1.96
SKA3Q8IX90 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms