Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AL590365.1-201ENST00000450788 243 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 snoU13.3-201ENST00000459441 104 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AL133162.1-201ENST00000463228 453 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 RN7SL542P-201ENST00000467147 294 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 PABPC1P3-201ENST00000469174 459 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 RPL9P6-201ENST00000492764 598 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC090453.1-201ENST00000495560 436 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC023141.12-201ENST00000512399 199 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC022483.1-201ENST00000514020 567 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AL139286.1-201ENST00000604465 483 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC091304.9-201ENST00000612091 226 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.5□□□□□ -1.69
VPS53Q5VIR6 OR5H6-203ENST00000642105 978 ntBASIC4.5□□□□□ -1.69
VPS53Q5VIR6 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AL022578.1-201ENST00000439330 1433 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 RNU6-289P-201ENST00000364093 107 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 RNU6-761P-201ENST00000384148 107 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 SNORD115.1-201ENST00000391109 76 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 RPL31P1-201ENST00000398116 372 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 RN7SKP159-201ENST00000410657 292 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 RPS3AP3-201ENST00000411933 242 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 CYP4F29P-201ENST00000420685 446 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 GLRXP1-201ENST00000423261 334 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 USP9YP18-201ENST00000425912 695 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AL359073.1-201ENST00000448036 403 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC003071.1-201ENST00000451219 789 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 MTCO3P20-201ENST00000454926 688 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC112204.1-201ENST00000502591 103 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 MTCO2P4-201ENST00000517968 247 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC008011.1-201ENST00000545989 227 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC006960.3-201ENST00000561845 705 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC034105.4-201ENST00000568304 277 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC009977.1-201ENST00000586015 570 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC010928.3-201ENST00000587712 541 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 VN1R79P-201ENST00000593540 513 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC098614.4-201ENST00000607601 462 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC005344.1-201ENST00000613391 459 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 AC090517.2-201ENST00000614966 680 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.49□□□□□ -1.69
VPS53Q5VIR6 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 SNORD82-201ENST00000365530 70 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 RNU6-809P-201ENST00000384461 107 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 RPL17P50-201ENST00000396131 546 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AL139415.2-201ENST00000431968 163 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 RPL7P28-201ENST00000437739 740 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC073614.1-201ENST00000438690 650 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AL353572.1-201ENST00000442490 417 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 NOTCH2P1-201ENST00000443481 624 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 USP9YP34-201ENST00000453983 808 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 PLGLA-201ENST00000465668 449 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 MTCO3P38-201ENST00000468910 766 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 ACTR3P3-201ENST00000480448 893 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 NDUFB4P2-201ENST00000509515 391 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 RNA5SP164-201ENST00000516533 110 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 RNU6-430P-201ENST00000517078 107 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC006270.2-201ENST00000578523 652 ntBASIC4.48□□□□□ -1.69
VPS53Q5VIR6 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.48□□□□□ -1.69
VPS53Q5VIR6 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms