Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC108078.2-201ENST00000510750 236 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AC067904.2-201ENST00000517322 1283 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 FAM92A1P1-201ENST00000528023 890 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AC087241.2-201ENST00000535801 324 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 LLPHP1-201ENST00000603571 367 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AC120053.1-201ENST00000607706 736 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AC123912.3-201ENST00000600907 1367 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 SNORA67.5-201ENST00000391036 107 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AL021407.1-201ENST00000404531 386 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 RPL31P2-201ENST00000413849 377 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 TRIM60P18-201ENST00000441518 828 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AC104435.1-201ENST00000483483 166 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 RPL30P11-201ENST00000495304 339 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AL049870.4-201ENST00000555741 486 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 RPP40P2-201ENST00000603596 712 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 FAM157B-203ENST00000639350 358 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 AL109809.4-201ENST00000603520 2185 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.45□□□□□ -2.02
CCDC88AQ3V6T2 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 NDUFB4P6-201ENST00000436819 366 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 UBE2V1P5-201ENST00000440070 405 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 ARPC3P2-201ENST00000457786 533 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 AC073901.1-201ENST00000462471 408 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 AC133963.2-201ENST00000513686 578 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 RNU6-1308P-201ENST00000516817 103 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 HMGB1P1-201ENST00000522557 636 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 LRRC37A5P-203ENST00000580181 585 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 AC020895.1-201ENST00000595362 272 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 AC011890.2-201ENST00000613393 294 ntBASIC2.44□□□□□ -2.02
CCDC88AQ3V6T2 MTCO3P30-201ENST00000426425 670 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 DPPA2P1-201ENST00000428060 556 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 MTCO1P42-201ENST00000457379 726 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AC090543.1-201ENST00000492168 485 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AC117532.1-201ENST00000514638 323 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 Y_RNA.670-201ENST00000516255 105 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 RNA5SP468-201ENST00000516782 93 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 RN7SKP277-201ENST00000516895 283 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AC239860.2-201ENST00000525886 270 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 PRELID2P1-201ENST00000552837 301 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AMZ2P1-203ENST00000565833 850 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AC011374.2-201ENST00000607135 526 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 VTRNA1-1-201ENST00000363120 99 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 RNA5SP190-201ENST00000365222 118 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 RNU2-17P-201ENST00000410290 190 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 SNRPFP4-201ENST00000456366 242 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AC104986.1-201ENST00000517978 436 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 ZNF720P1-201ENST00000562403 1939 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 ZNF92P3-201ENST00000596594 954 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 MTND4P35-201ENST00000604257 1375 ntBASIC2.43□□□□□ -2.02
CCDC88AQ3V6T2 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 FNDC3CP-201ENST00000420795 1155 ntBASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 HMGN2P21-201ENST00000447764 270 ntBASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 AL391834.1-201ENST00000609609 560 ntBASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 AC013562.2-201ENST00000611632 603 ntBASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 uc_338.9-201ENST00000617424 182 ntBASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 OR1S1-201ENST00000624470 978 ntBASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 AC005336.3-201ENST00000623833 2679 ntBASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC88AQ3V6T2 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 MIR337-201ENST00000362281 93 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 XKRYP4-201ENST00000414395 483 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC244098.2-201ENST00000422068 99 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AL353729.1-201ENST00000425044 720 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 XKRYP5-201ENST00000449659 483 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 MTND3P6-201ENST00000485242 339 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 RPS29P11-201ENST00000496507 171 ntBASIC2.41□□□□□ -2.02
CCDC88AQ3V6T2 RPL23AP63-201ENST00000498752 471 ntBASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms