Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 U73023.1-201ENST00000603134 700 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC068276.1-201ENST00000605793 379 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC135507.2-201ENST00000612443 309 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 U7.8-201ENST00000619968 63 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 AC095050.2-201ENST00000510748 1458 ntBASIC3.72□□□□□ -1.81
COL28A1Q2UY09 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
COL28A1Q2UY09 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL28A1Q2UY09 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 XIAPP3-201ENST00000312918 795 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 RNU5F-7P-201ENST00000363696 115 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 RNU5E-5P-201ENST00000365379 116 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 MIR490-201ENST00000384865 128 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AL138880.1-201ENST00000405824 642 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AL359704.1-201ENST00000411586 781 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 BX119904.4-201ENST00000424402 301 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AL591419.1-201ENST00000427423 339 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 MTCO2P16-201ENST00000436962 677 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 NPM1P49-201ENST00000448027 714 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 SNRPGP9-201ENST00000456025 225 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 RN7SL807P-201ENST00000470923 297 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 RPL31P13-201ENST00000484151 370 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AC116347.2-201ENST00000514912 523 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 SNORA31.20-201ENST00000517111 133 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 RNA5SP179-201ENST00000517284 121 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AC103783.1-201ENST00000520506 373 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 SNORD84-203ENST00000584275 78 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 UBE2L4-201ENST00000587688 464 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 KC877982.1-201ENST00000602313 470 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 TUG1_1.1-201ENST00000610654 145 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AL353748.2-201ENST00000622148 471 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AL158801.5-201ENST00000623123 465 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AC244205.2-202ENST00000635781 342 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 AC011460.1-201ENST00000636268 1834 ntBASIC3.71□□□□□ -1.82
COL28A1Q2UY09 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL28A1Q2UY09 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 SNORA31-201ENST00000362607 130 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 RNA5SP50-201ENST00000363731 107 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 RNA5SP167-201ENST00000365461 116 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 RNY3P10-201ENST00000384764 102 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 MTND1P21-201ENST00000412991 285 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 TOMM22P1-201ENST00000418578 312 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 ATP5HP2-201ENST00000433885 485 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 RPL21P112-201ENST00000434403 463 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 SKP1P1-201ENST00000438081 489 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AL360221.1-201ENST00000445989 335 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 ST13P20-201ENST00000447996 1065 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC010655.1-201ENST00000449336 292 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC098824.1-201ENST00000453565 980 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 MTCO1P42-201ENST00000457379 726 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AL133162.1-201ENST00000463228 453 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC112204.1-201ENST00000502591 103 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC010342.1-201ENST00000514047 877 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 RNU6-201P-201ENST00000517100 61 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC007115.1-201ENST00000546853 234 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC007424.1-203ENST00000554613 687 ntBASIC3.7□□□□□ -1.82
COL28A1Q2UY09 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms