Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.22□□□□□ -1.73
COL4A3Q01955 AC137499.1-201ENST00000427602 88 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AL358472.1-201ENST00000431295 329 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 HMGN2P31-201ENST00000432430 273 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 RPS15AP9-201ENST00000439856 381 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 CYCSP32-201ENST00000440548 321 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.22□□□□□ -1.73
COL4A3Q01955 RN7SKP256-201ENST00000517201 314 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.22□□□□□ -1.73
COL4A3Q01955 ZNF705CP-201ENST00000530515 889 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC093249.1-201ENST00000567049 203 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 AL606490.9-201ENST00000603331 271 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC010591.1-201ENST00000603941 649 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 SNORA51-201ENST00000606420 132 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC090617.10-201ENST00000624308 134 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 CR381572.1-201ENST00000625098 102 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A3Q01955 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A3Q01955 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.22□□□□□ -1.73
COL4A3Q01955 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A3Q01955 AL118496.1-201ENST00000440201 1812 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A3Q01955 RNU6-213P-201ENST00000384051 104 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 Y_RNA.474-201ENST00000384341 102 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 MIR649-201ENST00000384843 97 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AL356421.1-201ENST00000403255 413 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AL136116.1-201ENST00000403591 381 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 RPL31P52-201ENST00000407532 367 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 RN7SKP156-201ENST00000410308 342 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 PRELID3BP11-201ENST00000414230 479 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC127526.1-201ENST00000417526 366 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC007283.2-201ENST00000424739 197 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.22□□□□□ -1.73
COL4A3Q01955 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.22□□□□□ -1.73
COL4A3Q01955 NANOGP10-201ENST00000453325 895 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 RNU7-63P-201ENST00000459054 62 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.22□□□□□ -1.73
COL4A3Q01955 RNU6-1170P-201ENST00000515974 106 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC090151.1-201ENST00000520784 730 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.22□□□□□ -1.73
COL4A3Q01955 AC022616.3-201ENST00000523940 148 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.22□□□□□ -1.73
COL4A3Q01955 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.22□□□□□ -1.73
COL4A3Q01955 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A3Q01955 CR392039.4-201ENST00000624968 501 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A3Q01955 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL4A3Q01955 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL4A3Q01955 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL4A3Q01955 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
COL4A3Q01955 AC006020.1-201ENST00000420179 1854 ntBASIC4.21□□□□□ -1.73
COL4A3Q01955 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.21□□□□□ -1.73
COL4A3Q01955 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A3Q01955 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
COL4A3Q01955 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A3Q01955 AC093591.2-201ENST00000565254 3843 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A3Q01955 GVINP1-202ENST00000531871 7271 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 KPNA2P2-201ENST00000419546 1489 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
COL4A3Q01955 RNU6-254P-201ENST00000363377 107 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 Y_RNA.216-201ENST00000364205 93 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 RNA5SP22-201ENST00000365393 109 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 RNU2-22P-201ENST00000411266 212 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AC073136.2-201ENST00000417282 849 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.21□□□□□ -1.74
COL4A3Q01955 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
COL4A3Q01955 HMGB1P18-201ENST00000438801 619 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.21□□□□□ -1.74
COL4A3Q01955 AC079781.2-201ENST00000446424 169 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AC007967.1-201ENST00000455422 1159 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.21□□□□□ -1.74
COL4A3Q01955 AP000893.1-201ENST00000474462 794 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AC078785.3-201ENST00000476607 425 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AC110792.1-201ENST00000491826 472 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 EIF4EP3-201ENST00000498782 656 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 RPL38P4-201ENST00000502376 214 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 RNU4-49P-201ENST00000516080 140 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.21□□□□□ -1.74
COL4A3Q01955 BNIP3P6-201ENST00000549284 499 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 LSM6P2-201ENST00000552208 177 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.21□□□□□ -1.74
COL4A3Q01955 AC008638.3-201ENST00000603341 463 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AL592436.1-201ENST00000605135 558 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.21□□□□□ -1.74
COL4A3Q01955 AL355816.1-201ENST00000607951 118 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 AC243654.2-201ENST00000612843 443 ntBASIC4.21□□□□□ -1.74
COL4A3Q01955 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms