Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 DHX9P1-201ENST00000436565 3076 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC025031.4-201ENST00000621248 3271 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC087190.4-201ENST00000574616 8334 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA4Q00056 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA4Q00056 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
HOXA4Q00056 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA4Q00056 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA4Q00056 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 RNA5SP447-201ENST00000363749 119 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 RNU6-1029P-201ENST00000384109 107 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 MIR129-1-201ENST00000384972 72 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 FAT1P1-201ENST00000406588 507 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 RPS20P15-201ENST00000412792 311 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 RPL23AP38-201ENST00000423801 469 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AC093106.2-201ENST00000428212 385 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AL365400.1-201ENST00000431854 640 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 ELOCP18-201ENST00000434209 337 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 IFNA20P-201ENST00000436840 528 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA4Q00056 RPS26P2-201ENST00000440331 348 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 AC007677.1-201ENST00000445757 515 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC3.76□□□□□ -1.81
HOXA4Q00056 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 MTND1P18-201ENST00000448191 573 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 AL445433.1-201ENST00000457507 257 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 RPS23P1-201ENST00000491662 432 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA4Q00056 RNU4-29P-201ENST00000515943 174 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 RNU4-49P-201ENST00000516080 140 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 RNU6-1314P-201ENST00000517139 104 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 IGKV1-32-201ENST00000519290 311 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AP003385.6-201ENST00000531603 374 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA4Q00056 PSMA3P-201ENST00000555485 635 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AC091178.1-203ENST00000584586 279 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA4Q00056 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA4Q00056 AL008729.2-201ENST00000606393 473 ntBASIC3.76□□□□□ -1.81
HOXA4Q00056 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.76□□□□□ -1.81
HOXA4Q00056 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
HOXA4Q00056 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
HOXA4Q00056 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.76□□□□□ -1.81
HOXA4Q00056 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
HOXA4Q00056 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
HOXA4Q00056 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 MTCO1P9-201ENST00000505577 1534 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 ZNF33CP-201ENST00000432492 2030 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.75□□□□□ -1.81
HOXA4Q00056 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXA4Q00056 RNU6-552P-201ENST00000362869 119 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RNU1-32P-201ENST00000363937 159 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 Y_RNA.231-201ENST00000364358 102 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RNU6-38P-201ENST00000384085 107 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 MIR153-1-201ENST00000384914 90 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RNU6-510P-201ENST00000391239 108 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC097374.1-203ENST00000400783 485 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 MIR1250-201ENST00000408098 113 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RNU6-193P-201ENST00000410977 107 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 MTND3P8-201ENST00000412909 339 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 NDUFB4P5-201ENST00000415445 361 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 UBE2FP1-201ENST00000416536 447 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA4Q00056 AL645937.1-202ENST00000421799 937 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 ERLEC1P1-201ENST00000433806 578 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RPL35AP22-201ENST00000436855 335 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RPL23AP33-201ENST00000442301 452 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA4Q00056 AL118496.2-201ENST00000448300 230 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 TPT1P13-201ENST00000449760 499 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC012671.1-201ENST00000451912 203 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AL162395.1-201ENST00000457882 422 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RNU6-333P-201ENST00000459117 107 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 snoU13.1-201ENST00000459157 104 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA4Q00056 AC006463.2-201ENST00000473326 348 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 RPL21P99-201ENST00000480369 423 ntBASIC3.75□□□□□ -1.81
HOXA4Q00056 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC3.75□□□□□ -1.81
HOXA4Q00056 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms