Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC007038.2-201ENST00000608095 740 ntBASIC3.13□□□□□ -1.91
CDX1P47902 AC004908.2-201ENST00000609090 574 ntBASIC3.13□□□□□ -1.91
CDX1P47902 MIR6868-201ENST00000611215 58 ntBASIC3.13□□□□□ -1.91
CDX1P47902 TUG1_2.1-201ENST00000614234 87 ntBASIC3.13□□□□□ -1.91
CDX1P47902 MIR7844-201ENST00000616161 122 ntBASIC3.13□□□□□ -1.91
CDX1P47902 MIR6875-201ENST00000617506 72 ntBASIC3.13□□□□□ -1.91
CDX1P47902 AL139089.1-201ENST00000620372 975 ntBASIC3.13□□□□□ -1.91
CDX1P47902 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.13□□□□□ -1.91
CDX1P47902 AC093591.3-201ENST00000634516 308 ntBASIC3.13□□□□□ -1.91
CDX1P47902 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.13□□□□□ -1.91
CDX1P47902 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.13□□□□□ -1.91
CDX1P47902 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CDX1P47902 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.13□□□□□ -1.91
CDX1P47902 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CDX1P47902 AL138713.1-201ENST00000624026 2130 ntBASIC3.13□□□□□ -1.91
CDX1P47902 AL445523.1-201ENST00000451184 1362 ntBASIC3.12□□□□□ -1.91
CDX1P47902 OR4G2P-202ENST00000641004 1759 ntBASIC3.12□□□□□ -1.91
CDX1P47902 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CDX1P47902 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CDX1P47902 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 Y_RNA.97-201ENST00000363094 102 ntBASIC3.12□□□□□ -1.91
CDX1P47902 SNORA36C-201ENST00000384289 132 ntBASIC3.12□□□□□ -1.91
CDX1P47902 MIR591-201ENST00000385290 95 ntBASIC3.12□□□□□ -1.91
CDX1P47902 RNU6-278P-201ENST00000390945 109 ntBASIC3.12□□□□□ -1.91
CDX1P47902 RNU6-1197P-201ENST00000391183 107 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AL031577.2-201ENST00000404133 280 ntBASIC3.12□□□□□ -1.91
CDX1P47902 TXNP7-201ENST00000406296 293 ntBASIC3.12□□□□□ -1.91
CDX1P47902 MIR1251-201ENST00000408552 70 ntBASIC3.12□□□□□ -1.91
CDX1P47902 RN7SKP159-201ENST00000410657 292 ntBASIC3.12□□□□□ -1.91
CDX1P47902 RNU4-6P-201ENST00000410804 122 ntBASIC3.12□□□□□ -1.91
CDX1P47902 BX842559.1-201ENST00000419615 532 ntBASIC3.12□□□□□ -1.91
CDX1P47902 RPL7P2-201ENST00000427639 268 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AL590383.1-201ENST00000428602 75 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AC109583.1-201ENST00000432156 268 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AC092573.2-201ENST00000434546 243 ntBASIC3.12□□□□□ -1.91
CDX1P47902 LARP1BP3-201ENST00000437229 869 ntBASIC3.12□□□□□ -1.91
CDX1P47902 RPL22P17-201ENST00000438729 315 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 AL162389.1-201ENST00000449233 177 ntBASIC3.12□□□□□ -1.91
CDX1P47902 RPL36AP33-201ENST00000450395 310 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.12□□□□□ -1.91
CDX1P47902 AL359385.1-201ENST00000456509 365 ntBASIC3.12□□□□□ -1.91
CDX1P47902 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.12□□□□□ -1.91
CDX1P47902 RPL23AP41-201ENST00000484754 458 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AC055855.1-201ENST00000489563 579 ntBASIC3.12□□□□□ -1.91
CDX1P47902 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CDX1P47902 AC111000.2-201ENST00000507775 550 ntBASIC3.12□□□□□ -1.91
CDX1P47902 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.12□□□□□ -1.91
CDX1P47902 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.12□□□□□ -1.91
CDX1P47902 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.12□□□□□ -1.91
CDX1P47902 AP000857.1-201ENST00000532151 543 ntBASIC3.12□□□□□ -1.91
CDX1P47902 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.12□□□□□ -1.91
CDX1P47902 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.12□□□□□ -1.91
CDX1P47902 MRPS36P5-201ENST00000551909 298 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.12□□□□□ -1.91
CDX1P47902 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 AC037471.2-201ENST00000564941 598 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AC106785.1-201ENST00000565935 262 ntBASIC3.12□□□□□ -1.91
CDX1P47902 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.12□□□□□ -1.91
CDX1P47902 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.12□□□□□ -1.91
CDX1P47902 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 MIR4474-201ENST00000579189 78 ntBASIC3.12□□□□□ -1.91
CDX1P47902 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 AC006116.10-201ENST00000591836 581 ntBASIC3.12□□□□□ -1.91
CDX1P47902 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 BRDTP1-201ENST00000605735 677 ntBASIC3.12□□□□□ -1.91
CDX1P47902 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CDX1P47902 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.12□□□□□ -1.91
CDX1P47902 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AC012150.2-201ENST00000621300 544 ntBASIC3.12□□□□□ -1.91
CDX1P47902 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 AC006111.3-201ENST00000622137 383 ntBASIC3.12□□□□□ -1.91
CDX1P47902 MIR6500-201ENST00000622700 86 ntBASIC3.12□□□□□ -1.91
CDX1P47902 AC007494.3-201ENST00000624660 743 ntBASIC3.12□□□□□ -1.91
CDX1P47902 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 OR6C71P-202ENST00000641886 1107 ntBASIC3.12□□□□□ -1.91
CDX1P47902 PWAR6-201ENST00000552334 4618 ntBASIC3.12□□□□□ -1.91
CDX1P47902 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CDX1P47902 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.12□□□□□ -1.91
CDX1P47902 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CDX1P47902 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CDX1P47902 AC091152.2-201ENST00000591628 2569 ntBASIC3.11□□□□□ -1.91
CDX1P47902 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CDX1P47902 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.11□□□□□ -1.91
CDX1P47902 SDAD1P2-201ENST00000441308 2028 ntBASIC3.11□□□□□ -1.91
CDX1P47902 RNU6-809P-201ENST00000384461 107 ntBASIC3.11□□□□□ -1.91
CDX1P47902 MIR19A-201ENST00000384878 82 ntBASIC3.11□□□□□ -1.91
CDX1P47902 MIR514A1-201ENST00000385133 98 ntBASIC3.11□□□□□ -1.91
CDX1P47902 RPS4XP3-201ENST00000398541 413 ntBASIC3.11□□□□□ -1.91
CDX1P47902 AL109755.1-201ENST00000401791 649 ntBASIC3.11□□□□□ -1.91
CDX1P47902 SNX10-203ENST00000409367 746 ntTSL 5 BASIC3.11□□□□□ -1.91
CDX1P47902 SNORA57.3-201ENST00000411095 141 ntBASIC3.11□□□□□ -1.91
CDX1P47902 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.11□□□□□ -1.91
CDX1P47902 MTND2P18-201ENST00000419962 1030 ntBASIC3.11□□□□□ -1.91
CDX1P47902 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.11□□□□□ -1.91
CDX1P47902 MTATP6P17-201ENST00000431030 672 ntBASIC3.11□□□□□ -1.91
CDX1P47902 NDUFB4P6-201ENST00000436819 366 ntBASIC3.11□□□□□ -1.91
CDX1P47902 FTH1P1-201ENST00000437933 532 ntBASIC3.11□□□□□ -1.91
CDX1P47902 MTND1P30-201ENST00000441241 901 ntBASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms