Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RPS7P2-201ENST00000435134 607 ntBASIC2.75□□□□□ -1.97
CUX1P39880 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC2.75□□□□□ -1.97
CUX1P39880 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.75□□□□□ -1.97
CUX1P39880 RPL12P25-201ENST00000455592 494 ntBASIC2.75□□□□□ -1.97
CUX1P39880 AC080013.2-201ENST00000460866 323 ntBASIC2.75□□□□□ -1.97
CUX1P39880 AC073901.1-201ENST00000462471 408 ntBASIC2.75□□□□□ -1.97
CUX1P39880 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC2.75□□□□□ -1.97
CUX1P39880 AC007375.1-201ENST00000554513 578 ntBASIC2.75□□□□□ -1.97
CUX1P39880 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC2.75□□□□□ -1.97
CUX1P39880 LINC00216-201ENST00000623548 1126 ntBASIC2.75□□□□□ -1.97
CUX1P39880 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC2.75□□□□□ -1.97
CUX1P39880 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.75□□□□□ -1.97
CUX1P39880 AC007256.1-201ENST00000392253 2765 ntBASIC2.75□□□□□ -1.97
CUX1P39880 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CUX1P39880 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CUX1P39880 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
CUX1P39880 NR1H5P-201ENST00000452683 1377 ntBASIC2.74□□□□□ -1.97
CUX1P39880 AC110774.1-201ENST00000623567 2018 ntBASIC2.74□□□□□ -1.97
CUX1P39880 RNU6-174P-201ENST00000410406 106 ntBASIC2.74□□□□□ -1.97
CUX1P39880 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.74□□□□□ -1.97
CUX1P39880 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.74□□□□□ -1.97
CUX1P39880 BNIP3P2-201ENST00000441221 577 ntBASIC2.74□□□□□ -1.97
CUX1P39880 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.74□□□□□ -1.97
CUX1P39880 PTGES3P5-201ENST00000455109 434 ntBASIC2.74□□□□□ -1.97
CUX1P39880 OR7L1P-201ENST00000456181 380 ntBASIC2.74□□□□□ -1.97
CUX1P39880 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.74□□□□□ -1.97
CUX1P39880 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.74□□□□□ -1.97
CUX1P39880 RN7SKP234-201ENST00000517173 224 ntBASIC2.74□□□□□ -1.97
CUX1P39880 OR8X1P-201ENST00000534542 869 ntBASIC2.74□□□□□ -1.97
CUX1P39880 AL049838.1-201ENST00000563647 981 ntBASIC2.74□□□□□ -1.97
CUX1P39880 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.74□□□□□ -1.97
CUX1P39880 AC092159.4-201ENST00000624944 550 ntBASIC2.74□□□□□ -1.97
CUX1P39880 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
CUX1P39880 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
CUX1P39880 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.74□□□□□ -1.97
CUX1P39880 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
CUX1P39880 AC114546.3-201ENST00000623582 1734 ntBASIC2.74□□□□□ -1.97
CUX1P39880 AC245100.2-201ENST00000454544 1679 ntBASIC2.74□□□□□ -1.97
CUX1P39880 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.73□□□□□ -1.97
CUX1P39880 RNU6-53P-201ENST00000365367 106 ntBASIC2.73□□□□□ -1.97
CUX1P39880 RNU6-146P-201ENST00000384602 108 ntBASIC2.73□□□□□ -1.97
CUX1P39880 HMGN2P35-201ENST00000412164 270 ntBASIC2.73□□□□□ -1.97
CUX1P39880 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.73□□□□□ -1.97
CUX1P39880 AC048347.1-201ENST00000624621 427 ntBASIC2.73□□□□□ -1.97
CUX1P39880 RNU6-60P-201ENST00000364792 103 ntBASIC2.73□□□□□ -1.97
CUX1P39880 MIR591-201ENST00000385290 95 ntBASIC2.73□□□□□ -1.97
CUX1P39880 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.73□□□□□ -1.97
CUX1P39880 AC009237.2-201ENST00000421358 284 ntBASIC2.73□□□□□ -1.97
CUX1P39880 DPPA3P1-201ENST00000448050 469 ntBASIC2.73□□□□□ -1.97
CUX1P39880 RPS15AP17-201ENST00000470598 390 ntBASIC2.73□□□□□ -1.97
CUX1P39880 AC090255.1-201ENST00000495779 349 ntBASIC2.73□□□□□ -1.97
CUX1P39880 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CUX1P39880 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.73□□□□□ -1.97
CUX1P39880 AC019159.1-201ENST00000605094 187 ntBASIC2.73□□□□□ -1.97
CUX1P39880 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
CUX1P39880 AC016877.3-201ENST00000606778 504 ntBASIC2.73□□□□□ -1.97
CUX1P39880 RMST_6.1-201ENST00000611980 203 ntBASIC2.73□□□□□ -1.97
CUX1P39880 AC012150.2-201ENST00000621300 544 ntBASIC2.73□□□□□ -1.97
CUX1P39880 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
CUX1P39880 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CUX1P39880 MTND5P35-201ENST00000557537 1720 ntBASIC2.72□□□□□ -1.97
CUX1P39880 AL391987.6-201ENST00000305671 199 ntBASIC2.72□□□□□ -1.97
CUX1P39880 AC092832.1-201ENST00000422934 400 ntBASIC2.72□□□□□ -1.97
CUX1P39880 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.72□□□□□ -1.97
CUX1P39880 UBE2V1P5-201ENST00000440070 405 ntBASIC2.72□□□□□ -1.97
CUX1P39880 RPS15AP36-201ENST00000492022 382 ntBASIC2.72□□□□□ -1.97
CUX1P39880 AC087441.2-201ENST00000529141 262 ntBASIC2.72□□□□□ -1.97
CUX1P39880 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC2.72□□□□□ -1.97
CUX1P39880 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC2.72□□□□□ -1.97
CUX1P39880 MIR4421-201ENST00000578133 69 ntBASIC2.72□□□□□ -1.97
CUX1P39880 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CUX1P39880 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CUX1P39880 AC233981.2-201ENST00000611524 1614 ntBASIC2.72□□□□□ -1.97
CUX1P39880 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
CUX1P39880 VTRNA1-1-201ENST00000363120 99 ntBASIC2.71□□□□□ -1.98
CUX1P39880 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CUX1P39880 RPL7P37-201ENST00000425095 738 ntBASIC2.71□□□□□ -1.98
CUX1P39880 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CUX1P39880 SNRPFP4-201ENST00000456366 242 ntBASIC2.71□□□□□ -1.98
CUX1P39880 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.98
CUX1P39880 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.71□□□□□ -1.98
CUX1P39880 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.71□□□□□ -1.98
CUX1P39880 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.71□□□□□ -1.98
CUX1P39880 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.71□□□□□ -1.98
CUX1P39880 AL359740.1-201ENST00000624340 592 ntBASIC2.71□□□□□ -1.98
CUX1P39880 AL121594.5-201ENST00000631724 573 ntBASIC2.71□□□□□ -1.98
CUX1P39880 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
CUX1P39880 RPS3AP9-201ENST00000417027 792 ntBASIC2.7□□□□□ -1.98
CUX1P39880 BX510359.4-201ENST00000423750 193 ntBASIC2.7□□□□□ -1.98
CUX1P39880 AC093392.2-201ENST00000450682 337 ntBASIC2.7□□□□□ -1.98
CUX1P39880 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.7□□□□□ -1.98
CUX1P39880 APOOP1-201ENST00000604695 592 ntBASIC2.7□□□□□ -1.98
CUX1P39880 AL159169.2-201ENST00000610061 1269 ntBASIC2.7□□□□□ -1.98
CUX1P39880 AC104307.1-201ENST00000616142 196 ntBASIC2.7□□□□□ -1.98
CUX1P39880 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CUX1P39880 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.7□□□□□ -1.98
CUX1P39880 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
CUX1P39880 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
CUX1P39880 RNU1-42P-201ENST00000364033 160 ntBASIC2.69□□□□□ -1.98
CUX1P39880 Y_RNA.327-201ENST00000365201 102 ntBASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms