Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
HOXA9P31269 MIR181B1-201ENST00000385240 110 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 RPL21P75-201ENST00000396599 483 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 RPL21P28-201ENST00000401418 483 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 MTCO2P31-201ENST00000402702 684 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AL592114.1-201ENST00000403842 483 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 RPP40P1-201ENST00000426762 456 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXA9P31269 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXA9P31269 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXA9P31269 FTH1P25-201ENST00000447665 469 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 MRPL42P4-201ENST00000453267 443 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 RPS29P12-201ENST00000460178 152 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 RPL21P39-201ENST00000463605 483 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC128713.1-201ENST00000471495 306 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC011979.1-201ENST00000472300 483 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 RPL21P93-201ENST00000480465 489 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC233702.1-201ENST00000482905 502 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC087190.1-201ENST00000484462 480 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC093591.1-201ENST00000491435 481 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXA9P31269 RPL21P16-201ENST00000495531 483 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC091163.3-201ENST00000518269 1144 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 MTCO3P15-201ENST00000526563 574 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AP003385.6-201ENST00000531603 374 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXA9P31269 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC2.87□□□□□ -1.95
HOXA9P31269 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXA9P31269 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXA9P31269 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXA9P31269 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC2.87□□□□□ -1.95
HOXA9P31269 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.87□□□□□ -1.95
HOXA9P31269 AC106791.2-201ENST00000604680 391 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC008277.2-201ENST00000605196 797 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AL583856.2-201ENST00000606298 543 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC024060.1-201ENST00000607052 494 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AP000238.1-201ENST00000608759 426 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC104985.3-201ENST00000623479 597 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC084035.1-201ENST00000634543 607 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 AC013437.2-201ENST00000639587 677 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.87□□□□□ -1.95
HOXA9P31269 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HOXA9P31269 ASNSP3-201ENST00000451989 1306 ntBASIC2.87□□□□□ -1.95
HOXA9P31269 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.87□□□□□ -1.95
HOXA9P31269 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HOXA9P31269 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXA9P31269 RNA5SP68-201ENST00000363885 119 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXA9P31269 MTCO1P56-201ENST00000401674 224 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXA9P31269 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC2.86□□□□□ -1.95
HOXA9P31269 OOSP1P1-201ENST00000423265 274 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 MTCYBP32-201ENST00000427945 1084 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 YWHAZP7-201ENST00000436906 631 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 MTCYBP42-201ENST00000444653 1130 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 COX6CP18-201ENST00000448769 222 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 RPL21P41-201ENST00000459863 264 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC2.86□□□□□ -1.95
HOXA9P31269 RNF138P1-201ENST00000502765 546 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 RNU6-488P-201ENST00000515918 99 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 RNU6-276P-201ENST00000516114 96 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 AC023632.1-201ENST00000518463 375 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC2.86□□□□□ -1.95
HOXA9P31269 AC010376.1-201ENST00000522101 334 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HOXA9P31269 AP002770.2-201ENST00000543613 532 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.86□□□□□ -1.95
HOXA9P31269 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXA9P31269 AC044913.1-201ENST00000557200 430 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 AC234778.2-201ENST00000566241 354 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 ZNF861P-201ENST00000588126 639 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 AC012119.1-201ENST00000603184 222 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 AC011458.1-201ENST00000604034 617 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 MIR6817-201ENST00000615588 66 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.86□□□□□ -1.95
HOXA9P31269 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC2.86□□□□□ -1.95
HOXA9P31269 GABRG2-229ENST00000641017 3628 ntBASIC2.86□□□□□ -1.95
HOXA9P31269 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
HOXA9P31269 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXA9P31269 RNU6-374P-201ENST00000364146 108 ntBASIC2.85□□□□□ -1.95
HOXA9P31269 RNU6-925P-201ENST00000384629 104 ntBASIC2.85□□□□□ -1.95
HOXA9P31269 SNORD116-23-201ENST00000384645 92 ntBASIC2.85□□□□□ -1.95
HOXA9P31269 MIR217-201ENST00000384817 110 ntBASIC2.85□□□□□ -1.95
HOXA9P31269 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXA9P31269 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXA9P31269 RPL21P32-201ENST00000419877 477 ntBASIC2.85□□□□□ -1.95
HOXA9P31269 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXA9P31269 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXA9P31269 AC093151.1-201ENST00000427711 313 ntBASIC2.85□□□□□ -1.95
HOXA9P31269 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXA9P31269 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXA9P31269 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXA9P31269 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXA9P31269 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC2.85□□□□□ -1.95
HOXA9P31269 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXA9P31269 AC096571.1-202ENST00000506634 735 ntBASIC2.85□□□□□ -1.95
HOXA9P31269 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXA9P31269 RNA5SP282-201ENST00000516355 108 ntBASIC2.85□□□□□ -1.95
HOXA9P31269 IGKV2D-36-201ENST00000518643 226 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms