Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX1P28360 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX1P28360 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 CRIP1P1-201ENST00000427567 185 ntBASIC5.32□□□□□ -1.56
MSX1P28360 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX1P28360 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX1P28360 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX1P28360 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX1P28360 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX1P28360 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX1P28360 AC133134.1-201ENST00000466800 359 ntBASIC5.32□□□□□ -1.56
MSX1P28360 COX6B1P2-201ENST00000489624 230 ntBASIC5.32□□□□□ -1.56
MSX1P28360 AC009120.1-201ENST00000493458 473 ntBASIC5.32□□□□□ -1.56
MSX1P28360 AL359273.1-201ENST00000510918 627 ntBASIC5.32□□□□□ -1.56
MSX1P28360 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX1P28360 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX1P28360 AC087441.2-201ENST00000529141 262 ntBASIC5.32□□□□□ -1.56
MSX1P28360 HMGN2P36-201ENST00000529541 409 ntBASIC5.32□□□□□ -1.56
MSX1P28360 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.32□□□□□ -1.56
MSX1P28360 AC127381.1-201ENST00000555979 939 ntBASIC5.32□□□□□ -1.56
MSX1P28360 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
MSX1P28360 AC005951.2-201ENST00000576282 495 ntBASIC5.32□□□□□ -1.56
MSX1P28360 MIR5696-201ENST00000578474 85 ntBASIC5.32□□□□□ -1.56
MSX1P28360 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.32□□□□□ -1.56
MSX1P28360 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX1P28360 MZT1P2-201ENST00000604387 248 ntBASIC5.32□□□□□ -1.56
MSX1P28360 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.32□□□□□ -1.56
MSX1P28360 SDR42E1P1-201ENST00000611327 477 ntBASIC5.32□□□□□ -1.56
MSX1P28360 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX1P28360 AC243829.7-201ENST00000633081 225 ntBASIC5.32□□□□□ -1.56
MSX1P28360 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.32□□□□□ -1.56
MSX1P28360 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
MSX1P28360 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 AP002512.4-202ENST00000641599 4530 ntBASIC5.32□□□□□ -1.56
MSX1P28360 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
MSX1P28360 AL161756.3-201ENST00000641216 2071 ntBASIC5.32□□□□□ -1.56
MSX1P28360 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSX1P28360 AC025470.1-201ENST00000510053 2032 ntBASIC5.31□□□□□ -1.56
MSX1P28360 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.31□□□□□ -1.56
MSX1P28360 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSX1P28360 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSX1P28360 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSX1P28360 LINC02555-201ENST00000563933 1951 ntBASIC5.31□□□□□ -1.56
MSX1P28360 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
MSX1P28360 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.31□□□□□ -1.56
MSX1P28360 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.31□□□□□ -1.56
MSX1P28360 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC5.31□□□□□ -1.56
MSX1P28360 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
MSX1P28360 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSX1P28360 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
MSX1P28360 MIR411-201ENST00000362239 96 ntBASIC5.31□□□□□ -1.56
MSX1P28360 Y_RNA.16-201ENST00000362421 102 ntBASIC5.31□□□□□ -1.56
MSX1P28360 RNU6-989P-201ENST00000362756 107 ntBASIC5.31□□□□□ -1.56
MSX1P28360 Y_RNA.122-201ENST00000363331 96 ntBASIC5.31□□□□□ -1.56
MSX1P28360 RNU6-1317P-201ENST00000364582 104 ntBASIC5.31□□□□□ -1.56
MSX1P28360 Y_RNA.439-201ENST00000384119 94 ntBASIC5.31□□□□□ -1.56
MSX1P28360 EIF1P2-201ENST00000428233 350 ntBASIC5.31□□□□□ -1.56
MSX1P28360 DNAJC19P7-201ENST00000428811 344 ntBASIC5.31□□□□□ -1.56
MSX1P28360 OR4C10P-201ENST00000434991 931 ntBASIC5.31□□□□□ -1.56
MSX1P28360 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.31□□□□□ -1.56
MSX1P28360 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX1P28360 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.31□□□□□ -1.56
MSX1P28360 RPS17P15-201ENST00000475609 349 ntBASIC5.31□□□□□ -1.56
MSX1P28360 AP000797.2-201ENST00000475768 606 ntBASIC5.31□□□□□ -1.56
MSX1P28360 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
MSX1P28360 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC5.31□□□□□ -1.56
MSX1P28360 SERF1AP1-201ENST00000514575 187 ntBASIC5.31□□□□□ -1.56
MSX1P28360 AC091144.1-201ENST00000519573 138 ntBASIC5.31□□□□□ -1.56
MSX1P28360 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX1P28360 SNRPGP16-201ENST00000533275 226 ntBASIC5.31□□□□□ -1.56
MSX1P28360 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.31□□□□□ -1.56
MSX1P28360 AC018552.1-201ENST00000562099 811 ntBASIC5.31□□□□□ -1.56
MSX1P28360 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC5.31□□□□□ -1.56
MSX1P28360 RPL23AP87-202ENST00000573039 466 ntBASIC5.31□□□□□ -1.56
MSX1P28360 AL589674.2-201ENST00000604304 337 ntBASIC5.31□□□□□ -1.56
MSX1P28360 AL133481.2-203ENST00000607558 139 ntBASIC5.31□□□□□ -1.56
MSX1P28360 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC5.31□□□□□ -1.56
MSX1P28360 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
MSX1P28360 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
MSX1P28360 AC144833.1-201ENST00000567953 4089 ntBASIC5.31□□□□□ -1.56
MSX1P28360 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSX1P28360 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
MSX1P28360 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
MSX1P28360 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX1P28360 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX1P28360 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX1P28360 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
MSX1P28360 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC5.3□□□□□ -1.56
MSX1P28360 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
MSX1P28360 RNU6-682P-201ENST00000363843 106 ntBASIC5.3□□□□□ -1.56
MSX1P28360 Y_RNA.324-201ENST00000365165 102 ntBASIC5.3□□□□□ -1.56
MSX1P28360 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
MSX1P28360 MIR613-201ENST00000385248 95 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms