Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 FAR2P4-202ENST00000425399 584 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 RPL21P112-201ENST00000434403 463 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 CYCSP43-201ENST00000438233 310 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA3O43365 RPS15AP27-201ENST00000449183 343 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 AC009220.1-201ENST00000451614 275 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.05□□□□□ -1.76
HOXA3O43365 AC090096.1-201ENST00000489168 390 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 IGLV2-34-201ENST00000490007 283 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.05□□□□□ -1.76
HOXA3O43365 RPL39P5-202ENST00000512505 151 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.05□□□□□ -1.76
HOXA3O43365 RNU6-189P-201ENST00000516120 101 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA3O43365 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 APOOP3-201ENST00000536787 586 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 AC126177.3-201ENST00000551839 688 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 RPL23AP84-201ENST00000571193 464 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 MIR3667-201ENST00000581025 74 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA3O43365 MIR4737-201ENST00000583979 81 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 MIR7853-201ENST00000584820 132 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 AC006504.6-201ENST00000590142 199 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC4.05□□□□□ -1.76
HOXA3O43365 DPPA3P3-201ENST00000603842 430 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 AC124303.1-201ENST00000605703 360 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 OR52H1-202ENST00000641796 1061 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 SDAD1P1-202ENST00000524156 2051 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 ASNSP1-201ENST00000518311 1939 ntBASIC4.05□□□□□ -1.76
HOXA3O43365 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC4.05□□□□□ -1.76
HOXA3O43365 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
HOXA3O43365 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA3O43365 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
HOXA3O43365 RPL32P3-201ENST00000359025 275 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 SNORA63C-201ENST00000364578 129 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA3O43365 AC110754.1-201ENST00000399740 601 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 MTCYBP4-201ENST00000401524 249 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 NDUFS5P1-201ENST00000405668 289 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 RN7SKP158-201ENST00000410453 326 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 SSXP9-201ENST00000417503 292 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 AF186996.5-201ENST00000418098 904 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 Z82205.1-201ENST00000428456 297 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 BX323845.1-201ENST00000432417 179 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 RPL19P16-201ENST00000433839 588 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 AC090774.1-201ENST00000435925 246 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 FABP5P14-201ENST00000437273 393 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA3O43365 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA3O43365 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA3O43365 IFNWP4-201ENST00000453148 294 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 FGF7P3-201ENST00000454645 303 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 RNA5SP103-201ENST00000459503 118 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 AC091180.1-201ENST00000462104 372 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 AC130509.1-201ENST00000464158 433 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 VN1R105P-201ENST00000486595 910 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 RN7SL814P-201ENST00000487715 300 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 RNU6-123P-201ENST00000516163 102 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA3O43365 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA3O43365 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.04□□□□□ -1.76
HOXA3O43365 AL163153.1-201ENST00000554223 283 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 AC106782.4-201ENST00000568264 210 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 MIR4790-201ENST00000577799 79 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.04□□□□□ -1.76
HOXA3O43365 AL138889.2-201ENST00000603883 242 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 AP000942.4-201ENST00000604811 241 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.04□□□□□ -1.76
HOXA3O43365 AC012409.4-201ENST00000612923 249 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 AC040896.1-201ENST00000613819 479 ntBASIC4.04□□□□□ -1.76
HOXA3O43365 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.04□□□□□ -1.76
HOXA3O43365 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
HOXA3O43365 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 AC099654.2-201ENST00000433031 1980 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXA3O43365 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
HOXA3O43365 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA3O43365 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA3O43365 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
HOXA3O43365 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms