Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXC11O43248 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
HOXC11O43248 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXC11O43248 SNORA63.1-201ENST00000362493 131 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 RNU5E-8P-201ENST00000363502 116 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
HOXC11O43248 RNU6-533P-201ENST00000384144 107 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 MIR7-3-201ENST00000384898 110 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC11O43248 AL021407.1-201ENST00000404531 386 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC11O43248 RPL21P32-201ENST00000419877 477 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC11O43248 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC11O43248 PPP1R11P2-201ENST00000423543 382 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 KCTD9P3-201ENST00000434597 1169 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXC11O43248 RPL26P6-201ENST00000440913 438 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 AC118469.1-201ENST00000442943 488 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXC11O43248 EPS15P1-201ENST00000448836 336 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXC11O43248 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC11O43248 RPL31P61-201ENST00000496160 376 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 AC112204.1-201ENST00000502591 103 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC11O43248 ARL2BPP6-201ENST00000512757 439 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 RNU6-840P-201ENST00000517275 65 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 AC022695.1-201ENST00000522089 237 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 HIGD1AP10-201ENST00000527837 282 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXC11O43248 OR4T1P-201ENST00000554933 911 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC11O43248 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.89□□□□□ -1.79
HOXC11O43248 MIR3921-201ENST00000577308 85 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC11O43248 AC008507.1-201ENST00000587506 734 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC11O43248 AC027807.2-201ENST00000616099 408 ntBASIC3.89□□□□□ -1.79
HOXC11O43248 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXC11O43248 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXC11O43248 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
HOXC11O43248 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC11O43248 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC11O43248 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC11O43248 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC11O43248 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC11O43248 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC11O43248 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC11O43248 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXC11O43248 RNU6-278P-201ENST00000390945 109 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 MIR1290-201ENST00000408735 78 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC11O43248 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXC11O43248 RPL7L1P10-201ENST00000427790 463 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 ISCA1P2-201ENST00000438679 421 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 MTATP6P26-201ENST00000445926 662 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 AC092754.2-201ENST00000463506 460 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC11O43248 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC11O43248 AC135721.1-201ENST00000497954 479 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXC11O43248 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXC11O43248 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXC11O43248 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC11O43248 GMPSP1-201ENST00000514075 579 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXC11O43248 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC11O43248 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC11O43248 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXC11O43248 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXC11O43248 AP005205.1-201ENST00000563503 508 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXC11O43248 AC105224.1-201ENST00000587055 421 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXC11O43248 AP001981.2-201ENST00000603241 418 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 SNORA62.6-201ENST00000606322 83 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 AC007038.2-201ENST00000608095 740 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 AC128687.2-201ENST00000609657 566 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 AC093838.1-201ENST00000613014 469 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXC11O43248 AC244100.1-202ENST00000621554 382 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 TNPO1P3-201ENST00000436471 2662 ntBASIC3.88□□□□□ -1.79
HOXC11O43248 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC11O43248 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXC11O43248 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXC11O43248 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXC11O43248 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC11O43248 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC11O43248 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC11O43248 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC11O43248 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HOXC11O43248 MIR208A-201ENST00000362287 71 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 Y_RNA.46-201ENST00000362695 102 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 SNORA70.4-201ENST00000365509 134 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 MIR591-201ENST00000385290 95 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 SNORA26.8-201ENST00000391306 124 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
HOXC11O43248 CCNG1P1-201ENST00000406783 885 ntBASIC3.87□□□□□ -1.79
HOXC11O43248 AC093578.1-201ENST00000415219 368 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms