Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.540-201ENST00000384638 111 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 HSPE1P26-201ENST00000405341 275 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 RNU6-174P-201ENST00000410406 106 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 XKRYP4-201ENST00000414395 483 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 BX510359.4-201ENST00000423750 193 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 XKRYP5-201ENST00000449659 483 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 HMGB3P30-201ENST00000457863 606 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC88BA6NC98 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.8□□□□□ -1.96
CCDC88BA6NC98 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC88BA6NC98 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC88BA6NC98 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC88BA6NC98 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC88BA6NC98 MIR4458-201ENST00000578872 75 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 AP001542.2-201ENST00000593141 364 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 AC011468.4-201ENST00000603942 409 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 AC104307.1-201ENST00000616142 196 ntBASIC2.8□□□□□ -1.96
CCDC88BA6NC98 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC88BA6NC98 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
CCDC88BA6NC98 RNU1-42P-201ENST00000364033 160 ntBASIC2.79□□□□□ -1.96
CCDC88BA6NC98 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC88BA6NC98 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC88BA6NC98 AC245517.4-201ENST00000448601 281 ntBASIC2.79□□□□□ -1.96
CCDC88BA6NC98 RPS15AP36-201ENST00000492022 382 ntBASIC2.79□□□□□ -1.96
CCDC88BA6NC98 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC88BA6NC98 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC88BA6NC98 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC88BA6NC98 AL118496.1-201ENST00000440201 1812 ntBASIC2.79□□□□□ -1.96
CCDC88BA6NC98 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC88BA6NC98 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
CCDC88BA6NC98 Z82195.2-201ENST00000612348 18351 ntBASIC2.79□□□□□ -1.96
CCDC88BA6NC98 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
CCDC88BA6NC98 RNA5SP489-201ENST00000410986 109 ntBASIC2.78□□□□□ -1.96
CCDC88BA6NC98 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC88BA6NC98 TPT1P14-201ENST00000448018 505 ntBASIC2.78□□□□□ -1.96
CCDC88BA6NC98 HMGB3P21-201ENST00000452483 547 ntBASIC2.78□□□□□ -1.96
CCDC88BA6NC98 AC092754.2-201ENST00000463506 460 ntBASIC2.78□□□□□ -1.96
CCDC88BA6NC98 AC079203.1-201ENST00000487972 404 ntBASIC2.78□□□□□ -1.96
CCDC88BA6NC98 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC88BA6NC98 AC087441.2-201ENST00000529141 262 ntBASIC2.78□□□□□ -1.96
CCDC88BA6NC98 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC88BA6NC98 AC123786.2-201ENST00000603459 275 ntBASIC2.78□□□□□ -1.96
CCDC88BA6NC98 AC005156.1-201ENST00000613371 573 ntBASIC2.78□□□□□ -1.96
CCDC88BA6NC98 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC88BA6NC98 RPS3AP9-201ENST00000417027 792 ntBASIC2.77□□□□□ -1.97
CCDC88BA6NC98 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC88BA6NC98 DPPA3P1-201ENST00000448050 469 ntBASIC2.77□□□□□ -1.97
CCDC88BA6NC98 SNX5P1-201ENST00000505757 1041 ntBASIC2.77□□□□□ -1.97
CCDC88BA6NC98 MIR3935-201ENST00000583472 104 ntBASIC2.77□□□□□ -1.97
CCDC88BA6NC98 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC88BA6NC98 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC88BA6NC98 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC2.77□□□□□ -1.97
CCDC88BA6NC98 NDUFA5P6-201ENST00000542110 379 ntBASIC2.77□□□□□ -1.97
CCDC88BA6NC98 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC88BA6NC98 WISP1-OT1-201ENST00000602893 642 ntBASIC2.77□□□□□ -1.97
CCDC88BA6NC98 AL133393.1-201ENST00000603277 287 ntBASIC2.77□□□□□ -1.97
CCDC88BA6NC98 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC026241.1-201ENST00000517873 2142 ntBASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 VN1R96P-201ENST00000446052 858 ntBASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC092798.1-201ENST00000458542 409 ntBASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC021146.7-201ENST00000509604 775 ntBASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC015720.1-201ENST00000565251 277 ntBASIC2.76□□□□□ -1.97
CCDC88BA6NC98 MIR4421-201ENST00000578133 69 ntBASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC090953.1-201ENST00000604305 1092 ntBASIC2.76□□□□□ -1.97
CCDC88BA6NC98 RMST_6.1-201ENST00000611980 203 ntBASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC098679.5-201ENST00000624394 571 ntBASIC2.76□□□□□ -1.97
CCDC88BA6NC98 AC006026.1-201ENST00000444025 1803 ntBASIC2.75□□□□□ -1.97
CCDC88BA6NC98 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC88BA6NC98 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC88BA6NC98 MTND4P1-201ENST00000457501 1466 ntBASIC2.75□□□□□ -1.97
CCDC88BA6NC98 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
CCDC88BA6NC98 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.75□□□□□ -1.97
CCDC88BA6NC98 RNU6-1263P-201ENST00000384601 106 ntBASIC2.75□□□□□ -1.97
CCDC88BA6NC98 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC88BA6NC98 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC2.75□□□□□ -1.97
CCDC88BA6NC98 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.75□□□□□ -1.97
CCDC88BA6NC98 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.75□□□□□ -1.97
CCDC88BA6NC98 AL391987.6-201ENST00000305671 199 ntBASIC2.74□□□□□ -1.97
CCDC88BA6NC98 RNA5SP295-201ENST00000362655 121 ntBASIC2.74□□□□□ -1.97
CCDC88BA6NC98 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC88BA6NC98 MTCYBP45-201ENST00000435243 565 ntBASIC2.74□□□□□ -1.97
CCDC88BA6NC98 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC88BA6NC98 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC88BA6NC98 AC084851.1-201ENST00000529105 249 ntBASIC2.74□□□□□ -1.97
CCDC88BA6NC98 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC2.74□□□□□ -1.97
CCDC88BA6NC98 MIR3618-201ENST00000580330 88 ntBASIC2.74□□□□□ -1.97
CCDC88BA6NC98 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC2.74□□□□□ -1.97
CCDC88BA6NC98 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC88BA6NC98 AL109809.4-201ENST00000603520 2185 ntBASIC2.74□□□□□ -1.97
CCDC88BA6NC98 MFF-206ENST00000392059 1710 ntTSL 5 BASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms