Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 RNU1-43P-201ENST00000365052 165 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 RNU6-1093P-201ENST00000391194 107 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 HSPA8P15-201ENST00000401676 786 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC016712.1-201ENST00000431088 378 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 ELOCP18-201ENST00000434209 337 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 RPS17P8-201ENST00000434525 335 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 RPS3AP12-201ENST00000443616 753 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 FTH1P25-201ENST00000447665 469 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AL389915.2-201ENST00000454576 441 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 PPIAP21-201ENST00000464473 501 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC005532.2-201ENST00000467154 373 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AP000797.2-201ENST00000475768 606 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 RPS24P16-201ENST00000497294 392 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 NDUFB5P1-201ENST00000508134 564 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC093815.1-201ENST00000508637 280 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC005798.1-201ENST00000513715 387 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC144568.1-201ENST00000520139 137 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AL162431.4-201ENST00000604674 411 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 HMGB1P50-201ENST00000605814 607 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC002044.1-201ENST00000606707 158 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC133552.1-201ENST00000569988 4007 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 STK31-205ENST00000433467 3085 ntTSL 2 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 SAGE2P-201ENST00000420011 2126 ntBASIC5.56□□□□□ -1.52
USP3Q9Y6I4 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AP005435.3-201ENST00000531260 3198 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AL359893.1-201ENST00000447628 1580 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 U3.3-201ENST00000362986 216 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC019155.1-201ENST00000382242 574 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 MIR625-201ENST00000385047 85 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC013442.1-201ENST00000397347 228 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 DUTP5-201ENST00000406790 469 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 RPL7AP49-201ENST00000429522 581 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AL591438.1-201ENST00000433508 581 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AL392103.1-201ENST00000447000 198 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AL031274.1-201ENST00000450334 232 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 Z92846.1-201ENST00000456203 268 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC008953.1-201ENST00000497334 318 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 SNRPCP2-201ENST00000504370 475 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 RNU6-390P-201ENST00000516259 103 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 IGLV2-28-201ENST00000520681 304 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC009643.1-201ENST00000532030 391 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 BCORP1-203ENST00000513194 5093 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 FAM91A3P-201ENST00000456826 2544 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 AC005183.1-201ENST00000603687 1979 ntBASIC5.55□□□□□ -1.52
USP3Q9Y6I4 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP3Q9Y6I4 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP3Q9Y6I4 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms