Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 BTF3P5-201ENST00000457252 467 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 RPS29P2-201ENST00000479278 136 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 RPL31P13-201ENST00000484151 370 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 HMGB1P22-201ENST00000505315 124 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AC006390.1-201ENST00000508068 283 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 POU5F1P7-201ENST00000508759 541 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 MTCYBP43-201ENST00000513621 740 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 GMPSP1-201ENST00000514075 579 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 RNU6-1095P-201ENST00000516148 108 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 MTCO1P47-201ENST00000523889 1271 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AL121603.1-201ENST00000553815 142 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AC008088.1-201ENST00000580993 280 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AP001004.1-201ENST00000582468 324 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AC004853.1-201ENST00000604902 698 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AC022079.1-201ENST00000621546 602 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AC127502.3-201ENST00000636170 1206 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 USP8P1-201ENST00000494673 3183 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 AL445523.1-201ENST00000451184 1362 ntBASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC3Q9BQI4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AP001148.1-201ENST00000624124 2359 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AL672167.1-206ENST00000356293 943 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 RNA5SP235-201ENST00000365411 114 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 SNORA48.2-201ENST00000390926 124 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 U3.39-201ENST00000408569 239 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 RN7SKP53-201ENST00000411337 315 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 TOMM22P1-201ENST00000418578 312 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 MTND4LP10-201ENST00000435146 291 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 MTCO3P16-201ENST00000454456 754 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 CFTRP1-201ENST00000456646 183 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AL136097.1-201ENST00000456945 913 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 ARPC3P2-201ENST00000457786 533 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 RNU7-125P-201ENST00000458760 62 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC072039.1-201ENST00000477611 581 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC106872.3-201ENST00000495104 446 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC093663.1-201ENST00000497190 394 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC021678.1-201ENST00000505195 936 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 IGKV2-26-201ENST00000518305 343 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AP004371.1-201ENST00000525240 214 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 OR4P1P-201ENST00000530808 1136 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AP000889.1-201ENST00000530968 660 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 ZNF192P1-203ENST00000565888 810 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 BBIP1P1-201ENST00000602999 279 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AL034351.1-201ENST00000605288 668 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AC011816.2-201ENST00000607089 556 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 AL356596.1-201ENST00000624230 379 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 PWAR6-201ENST00000552334 4618 ntBASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC3Q9BQI4 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 CR381670.1-201ENST00000624291 1693 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 AL645937.1-201ENST00000641739 1652 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 ZNF833P-201ENST00000424938 1494 ntBASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.36□□□□□ -1.87
CCDC3Q9BQI4 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms